Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02520 471 / 2e-170 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 467 / 6e-169 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G16050 450 / 3e-162 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT1G78300 445 / 3e-160 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 437 / 4e-157 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT4G09000 435 / 4e-156 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G65430 397 / 1e-141 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT5G10450 397 / 2e-141 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT1G26480 360 / 2e-126 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 349 / 2e-122 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017584 [exp] 523 / 0 AT3G02520 471 / 1e-170 general regulatory factor 7 (.1) Lus10036481 [exp] 449 / 5e-162 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10020940 [exp] 443 / 2e-159 AT1G78300 483 / 2e-175 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10008715 [exp] 427 / 5e-153 AT1G78300 459 / 2e-165 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 425 / 3e-152 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10035934 [exp] 387 / 3e-137 AT5G65430 450 / 1e-162 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10025727 [exp] 383 / 1e-135 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10040534 [exp] 375 / 3e-132 AT5G65430 439 / 1e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10014899 [exp] 371 / 1e-130 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101700 [exp] 496 / 2e-180 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 491 / 3e-178 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 456 / 1e-164 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 451 / 1e-162 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G157700 [exp] 383 / 6e-136 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 379 / 5e-134 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.011G110900 [exp] 371 / 6e-131 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 370 / 1e-130 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 361 / 4e-127 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.008G095000 [exp] 361 / 6e-127 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10033545 pacid=23143460 polypeptide=Lus10033545 locus=Lus10033545.g ID=Lus10033545.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCTGAAGCTTCCCGCGAGGACAATGTCTACATGGCAAAGTTGGCCGAGCAGGCTGAACGTTACGAGGAAATGGTTGAGTTTATGGAGAAAG TTGCCAAGACAGTTGACGTTGAGGAGCTAACCGTGGAGGAAAGGAACCTACTTTCTGTGGCTTACAAGAACGTGATTGGGGCCAGAAGAGCTTCATGGAG AATTATCTCTTCCATCGAGCAGAAAGAAGAAAGCAGGGGAAATGAGGACCATGTTTCTATTATCAAGGAGTACAGGTCCAAGATTGAAACTGAGTTGAGC AAGATTTGTGATGGCATCCTGAACCTTCTTGAGTCTCATCTCATTCCTGCTACCTCCGCCGCTGAGTCTAAGGTCTTTTACCTTAAAATGAAGGGTGACT ACCATAGGTATCTTGCAGAGTTTAAAACTGGAGCTGAGAGGAAGGAAGCTGCTGAGAGCACCTTGTTGGCTTACAAGTCCGCTCAGGATATTGCCCTTGC TGATTTGGCTCCTACACACCCAATCCGTTTGGGACTGGCGCTTAACTTCTCCGTTTTCTACTATGAGATCCTCAACTCGCCTGATCGGGCATGCAATCTT GCAAAACAGGCTTTTGATGAGGCCATCTCCGAGCTGGACACACTAGGGGAAGAATCATACAAGGACAGCACATTGATCATGCAATTGCTCCGTGACAATT TGACACTGTGGACTTCTGATATCACTGATGATGCTGGAGATGAGATCAAGGAAGCATCAACGAAGCGTGATTCAGGAGAGGGACAACAATAG
AA sequence Show only first row Show all	>Lus10033545 pacid=23143460 polypeptide=Lus10033545 locus=Lus10033545.g ID=Lus10033545.BGIv1.0 annot-version=v1.0 MSPSEASREDNVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSIIKEYRSKIETELS KICDGILNLLESHLIPATSAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNL AKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKEASTKRDSGEGQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	0	1
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	3.7	0.8383
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	12.2	0.8352
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031724 [exp]	15.1	0.7636
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	15.9	0.8377
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Lus10035758 [exp]	15.9	0.7968
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	16.1	0.8124
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Lus10032095 [exp]	16.2	0.7782
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	16.9	0.8274
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	18.5	0.8273
AT1G07940			GTP binding Elongation factor ...		Lus10040378 [exp]	18.7	0.8145

Compare expression of checked genes

Lus10033545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.