Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02530 968 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 957 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 215 / 6e-63 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 186 / 4e-52 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 185 / 6e-52 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 179 / 1e-49 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G18190 168 / 1e-45 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 164 / 5e-44 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 134 / 1e-33 TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 56 / 5e-08 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017585 [exp] 1047 / 0 AT3G02530 1007 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006457 [exp] 206 / 1e-59 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 206 / 2e-59 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 200 / 2e-57 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 198 / 6e-57 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 197 / 2e-56 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 197 / 2e-56 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 187 / 2e-52 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 184 / 3e-51 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101500 [exp] 1014 / 0 AT3G02530 968 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.017G113601 [exp] 1007 / 0 AT3G02530 972 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 201 / 8e-58 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 200 / 1e-57 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 198 / 1e-56 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 193 / 5e-55 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 182 / 7e-51 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 182 / 9e-51 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 182 / 1e-50 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 181 / 3e-50 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10033546 pacid=23143422 polypeptide=Lus10033546 locus=Lus10033546.g ID=Lus10033546.BGIv1.0 annot-version=v1.0 ATGTCTCTCCGAGTATTGAACCCTAATGCCGAGGTTCTCAACAAATCGGCGGCACTTCACATGAACATCAATGCCGCCAAGGGTTTGCAGGACGTTCTCA AGTCTAATCTCGGCCCTAAAGGCACCATCAAGATGCTTGTTGGCGGAGCTGGAGATATTAAGCTCACTAAGGACGGCAACACTCTGTTAAAAGAAATGCA AATTCAAAATCCAACAGCAATTATGATTGCAAGGACTGCTGTTGCTCAAGATGACATTAGCGGTGATGGTACAACGTCTACTGTGATCTTCATCGGGGAG CTAATGAAACAGTCTGAACGCTACATTGATGAAGGAATGCATCCACGGGTTTTGGTTGATGGCTTTGAAATCGCTAAAAGGGCAACTCTCCAGTTTCTTG AAAAATTTAAGACTCCTGTTGTAATTGGCAATGAACCTGACCGGGAGATTCTAAAGATGGTTGCAAGAACAACAGTGAGAACTAAGCTGTATGAATCATT GGCTGATCAGTTGACCGACATAGTTGTCAATGCGGTTCTCTGCATACGAAAACCTGAAGAATCTATTGATCTCTTCATGGTGGAGATTATGCACATGCGT CATAAGTTTGATGTTGATACACGTCTGGTTGAAGGCCTCGTCCTTGATCATGGTTCCAGACATCCGGATATGAAGCGACGGGCCGAGAACTGTTTCATCT TGACGTGCAATGTGTCTCTGGAATACGATAAGAGCGAGATAAATGCAGGATTTTTCTACTCAAATGCCGAGCAGAGGGAGGCTATGGTTGCTGCTGAAAG GCGTCAAGTTGATGAAAGAGTGAAGAAGATTATTGAACTGAAGGATAAGCTCTGCTCGGGTAATGATACGAACTTTGTTGTTATTAATCAAAAGGGCATT GACCCTCCATCACTGGATCTTCTGGCACGAGCTGGGATTATTGCCCTTCGAAGAGCAAAGCGTAGGAATATGGAGCGTCTTGTATTGGCTTGTGGTGGAG AGGCTGTTAATTCTGTCGATGATCTGACTCCTGATTGCCTAGGATGGGCTGGTTTGGTTTATGAGCACATCCTTGGTGAAGAAAAGTATACTTTCGTCGA ACAAGTAAAAAATCCTCATTCTTGTACCATCTTGATCAAAGGACCCAATGACCACACAATTGCCCAAATCAAGGATGCCGTCCGAGACGGGCTAAGATCA GTTAAAAATACCATTGAGGATGAAGCTGTTGTACTTGGAGCTGGAGCTTTTGAGCTTGCGGCCAGAAAATACTTGCTCAGCGAAGTGAAGAAAACTGTTA AAGGGCGTGCCCAGCTTGGTGTTGAAGCTTTTGCTGATGCCCTACTTGTGATACCAAAAACTCTGGCTGAGAACTCTGGACTCGACACCCAGGACGAGAT AGTTGCTCTTACGGGAGAACACGATAGGGACAACATTGTGGGAATGAACCTCCAGACAGGAGGCCCTCTGGATCCCCAAATGGATGGTATATTCGATAAC TACTCAGTTAAACGGCAGCTTATTAACTCTGGACCTGTGATCGCATCCCAGCTCTTGTTGGTTGACGAAGTTATTCGTGCTGGGCGTAACATGAGAAAGC CAACCTAG
AA sequence Show only first row Show all	>Lus10033546 pacid=23143422 polypeptide=Lus10033546 locus=Lus10033546.g ID=Lus10033546.BGIv1.0 annot-version=v1.0 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGE LMKQSERYIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVIGNEPDREILKMVARTTVRTKLYESLADQLTDIVVNAVLCIRKPEESIDLFMVEIMHMR HKFDVDTRLVEGLVLDHGSRHPDMKRRAENCFILTCNVSLEYDKSEINAGFFYSNAEQREAMVAAERRQVDERVKKIIELKDKLCSGNDTNFVVINQKGI DPPSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHILGEEKYTFVEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRS VKNTIEDEAVVLGAGAFELAARKYLLSEVKKTVKGRAQLGVEAFADALLVIPKTLAENSGLDTQDEIVALTGEHDRDNIVGMNLQTGGPLDPQMDGIFDN YSVKRQLINSGPVIASQLLLVDEVIRAGRNMRKPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10033546 [exp]	0	1
AT5G15610			Proteasome component (PCI) dom...		Lus10013192 [exp]	1.7	0.8686
AT4G24820			26S proteasome, regulatory sub...		Lus10027348 [exp]	2.8	0.8514
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	4.5	0.8492
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	14.7	0.8487
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	16.4	0.8401
AT2G34040			Apoptosis inhibitory protein 5...		Lus10005277 [exp]	16.5	0.8316
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	16.7	0.8568
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	18.7	0.8339
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	19.5	0.8607
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	19.6	0.8155

Compare expression of checked genes

Lus10033546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.