Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 330 / 3e-112 ATCXE17 carboxyesterase 17 (.1) AT1G68620 307 / 2e-103 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 172 / 8e-51 ATCXE20 carboxyesterase 20 (.1) AT5G06570 156 / 9e-45 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G27320 156 / 1e-44 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 154 / 6e-44 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 151 / 8e-43 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 150 / 2e-42 ATCXE18 carboxyesterase 18 (.1) AT3G48700 145 / 1e-40 ATCXE13 carboxyesterase 13 (.1) AT3G48690 142 / 9e-40 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017587 [exp] 625 / 0 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10041473 [exp] 225 / 4e-71 AT1G68620 248 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 208 / 7e-65 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 200 / 9e-62 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10036168 [exp] 180 / 5e-54 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 176 / 3e-52 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10012073 [exp] 175 / 6e-52 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10015988 [exp] 174 / 1e-51 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027909 [exp] 173 / 2e-51 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113700 [exp] 395 / 5e-138 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 387 / 1e-134 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 338 / 3e-115 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 322 / 2e-109 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028300 [exp] 202 / 5e-63 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 186 / 2e-56 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 183 / 5e-55 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.009G104100 [exp] 181 / 2e-54 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 179 / 8e-54 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 177 / 4e-53 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10033548 pacid=23143414 polypeptide=Lus10033548 locus=Lus10033548.g ID=Lus10033548.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTCTCATACGACCCAAGGTTCAACCAGCTGATCCACCCACACCACAGCAGCATAATCAAAGACGAAATCCAAGGCTTACTCAAAGTGTACA AAGACGGCCGGGTCGAAAGGCTTCCCGTCGTCCCTACCGTGCCTTGCACGTCATCAGAAGCCGGCTTCGGAGTGACATCCGCGGATGCCATGATCCATAA GTTTTCCAACTTGTGGTGTCGTATATATGTTCCAGGTAGTGGTGGTGATCATAAGCTTCCGGTGGTTGTGTACTTCCATGGAGGCGGGTTTTGTGTCGGG TCAGCTGCTTGGAGCTGTTACCACGGGTTTCTATCGAGGCTTGCAGCAAGAGCAGGATGCGTCGTCTTCTCCGTCGATTATCGACTAGCGCCTGAGCACC GCCTTCCTGCCGCCTACGACGATGGCCTCAAAGCTCTTTCTTGGATCCTAAGTGAGGAGAACCGTTCTTCTCAATGGTGGAGTAGGAGATGCAACTTGGC AAGCGGCAGCGTGTACCTCGCCGGCGACAGTGCAGGAGCAAACATTGCTTACAACGTAGCCACAACTCTGGCCACCACCTCCAAGTTCAACAATGTGGTC AAGGGCATGATCTTAATCCAACCGTTCTTTGGCGGAGAGGCAAGGACTCCATCCGAGATCAAAAGCATGCCTTATAACTCATCATCGCCACTTACTCTCT CTGCCTCCGACACCTATTGGAGGCTGTCTCTTCCTTTCGGCGCCAACCGTGATCATCCTTTCTGCAACCCTTTACGTGCTAATTATAAGCTGCCGCAGCA GCAGCTCCCACAGGCGATGGTTTGCGTGTCGGAGATGGATATTCTGAGGGATAGGAACTTGGAGCTCTGCAATTTCATGAGGAGATCTGGGAATAAGGAA GTTGAGATGATGGTTTATGGAGGAGTTGGGCATGCTTTTCAGATTCTAGACCGTTCTGGTGCCGCTCAGATCAGAGTCCAGGAGATGATTTCGCATATCA CAACTTTCATTCATCAATGA
AA sequence Show only first row Show all	>Lus10033548 pacid=23143414 polypeptide=Lus10033548 locus=Lus10033548.g ID=Lus10033548.BGIv1.0 annot-version=v1.0 MASVSYDPRFNQLIHPHHSSIIKDEIQGLLKVYKDGRVERLPVVPTVPCTSSEAGFGVTSADAMIHKFSNLWCRIYVPGSGGDHKLPVVVYFHGGGFCVG SAAWSCYHGFLSRLAARAGCVVFSVDYRLAPEHRLPAAYDDGLKALSWILSEENRSSQWWSRRCNLASGSVYLAGDSAGANIAYNVATTLATTSKFNNVV KGMILIQPFFGGEARTPSEIKSMPYNSSSPLTLSASDTYWRLSLPFGANRDHPFCNPLRANYKLPQQQLPQAMVCVSEMDILRDRNLELCNFMRRSGNKE VEMMVYGGVGHAFQILDRSGAAQIRVQEMISHITTFIHQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	0	1
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10015930 [exp]	1.0	0.8603
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	2.4	0.8546
AT1G13570			F-box/RNI-like superfamily pro...		Lus10041818 [exp]	2.8	0.8148
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	4.0	0.8548
AT5G44620		CYP706A3	"cytochrome P450, family 706, ...		Lus10024575 [exp]	4.2	0.7860
					Lus10037930 [exp]	5.5	0.8119
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	7.1	0.8252
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10009914 [exp]	7.5	0.8180
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	8.5	0.8346
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022312 [exp]	9.0	0.8134

Compare expression of checked genes

Lus10033548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.