Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67140 2034 / 0 SWEETIE SWEETIE, HEAT repeat-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017588 [exp] 3732 / 0 AT1G67140 2372 / 0.0 SWEETIE, HEAT repeat-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101250 [exp] 2462 / 0 AT1G67140 2518 / 0.0 SWEETIE, HEAT repeat-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033549 pacid=23143378 polypeptide=Lus10033549 locus=Lus10033549.g ID=Lus10033549.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGTTATGTGAGGGAGAGCATACCACTCTCCCGCTTCGGTGTGTTAGTGGCTCAGATGGAGTCCCTGGTGGCTTCGGCATCTCAGAAACTTC CAGATCCTCTCCTTTGCTTCGATCTGCTCTCTGATCTCATTTCCGCCATAGAAGAAGAGCCACAGGAATCTATTCTTTTATGGCAAAGGAAATGTGAGGA TGCACTGTATGCATTACTTGCTCTCGGAGCAAGGCGACCTGTTCGGCACTTGGCATCAGTAGCAATGGCGAATATAATATCGAAAGGAGATAGTATTTCG ATATACTCGAGAGCAAGTACTCTGCAAGGGTTTCTTGCTGATGGGAAGAAGAACGAGCCTCAGAAAGTTGCTGGTGCTGCACAATGCTTGGGAGAACTAT ATCGGCATTTTGGAAGAAAAATCACATCAGGTGTCCTTGAAACAACATCAATTGCAACTAAACTAATGAAGTTTAATGAGGAGTTTGTGAGACAAGAGGC TCTGCTTATGCTTCAAAAAGCTTTGGAAGGATCTGGTGGTAGTGCAATGTCTTCAGCATACACTGAAGCATACCGCATTATCACACGCATTGGTGTTGCG GATAAGTCTCCTATAGTTAGAATAGCTGCTGCTTGCTGCCTGAAGGCTTTTGCCAGTGTTGGAGGACCTGGCTTAGGAGCTGCAGAACTTGAGAGTTTGG CGTCTTATTGTGGCAGGGCAAGTCTTCTGGGCCATTTACTTTTTTCTGTCCTGCTCTTGAGGATCCTATTTCATCCGTCAGAGTCTCATTTGCTGATGCT TTGGGTTGGGCTCCCTTCTTGCTCTTGGAATGACTCCAGAAGCACAGATACCGATCTCCAGAACTATGGCGTGCAGGTCATGGAAATGCTTCGCACAGAT GGTTCAGTTGATGCCCATGCATTTGCATGTGTTCTCTATATCCTGCGAGTTGGGGTGACTGATCAGATGACAGAACCTACTCAGAGGGGATTCTTGGTTT TCCTTGGTAACAGGTCCTCTGGTGCCAGTCCTTCAATGAAAATTGCTGCTTTGCGTACCATGTCTTACACCTTGAATACATTGGGTGAGGTTCCTATTGA GTTTAAGGAAGTTTTTGACTATGCAGTTCTCGATGCAGTATCTCACCCATTGCAACTGGTGCGTGTTGAGGCTGCTTTAACGTTGCGTGTGTTGGCTGAG GTTGATCCTACATGTGTTGGTGGTTTGGTTTCTTATGGGGTGACCACATTAAGTGCCTTGAGGGAAACGATCTTATTTGGCAAGGGAACTACTGTTAAAT CCGAGCTTGATTCTTTGCATGGACAAGCTACTGTTTTGGCTGCTCTAGTTGCTGTATCTCCAAAGCTACCTCTAGGTTATCCGGCAAGATTGCCTAATTC TGTGCTTGAAGTGTCCAAAAGGATGCTGACCGAATCTAGTCGGAATCCTACTGCTGCAACTGCTGTGAAGGAGGCTGGTTGGTTGCTTCTGTCATCACTT TTGTCTTCTATGCCAAAGGAGGAACTTGAAGATCAGGTCTTTGATATTCTTTCTTTATGGGCCACTCTCTTTAGCAAAAGTCCTGAACAAGAAACTAATC AGGGTGGAGATTTGACATCTAAGATATGTGTGTGGTCTGCTGCTGTTGACGCACTTGCTGCATTTGTAAGATGCTTCATTACATCCAGTAGCGCTGACAA TGGTATTTTGCTTCAGCCAGTTTTGGTTTACCTGAGTAGCGCTCTGTCTTACATATCAGTGCTACAAAGGAAAGACCAATCAAAGATTAAGCCAGCAATG GACATATTCATTATTAGAACCTTAATGGCTTATCGAACCCTTCCCGACCCAATGGCATTCAAGAGGGATCATACTCAGATGATTCAACTGTGTACAATAC CATTTAGAGATCCGTCTAAATATGAGGAAAGCTCCTGCTTGAGGTTACTGTTGGACAAAAAAGATGCGTGGCTGGGACCTTGGATTCCTGCAAGGGATTG GTTGGAGGATGAACTGCGTGCTTTTCAAGGTGGAGCAGATGGCCTTGTCCCTTGTATATGGGAAAGTGAACTCTCCAGTTTTCCTCAGCCCGAAACGATT AACAAAATGTTAGTCAACCAGATGCTACTCTGCTTTGGTCTCATGTTTTCCACTCAGGAAAGTAACGGAATGCTATCACTTCTTCAAATGATCGAGCAGT GTCTAAAAGCTGGGAGAAAGCAGACATGGCATGCAGCCAGTTTGAGCAATATATGTGTGGGCCTCATTGCTGGACTGAAGGCTTTGATTGCACTACGTCC TCAATCGTTAGGACCTGAGATATTAACTATAGCACATGCCATCTTTCAGAGTATTCTGGCAGAAGGGGAAATTTGTGCTTCTCAGCGCAGAGCATCCGCA GAAGGTCTCGGTCTTTTAGCACGCCTTGGGAATGACCTTTTCACTGCCAAAATGACCAGGTCACTTCTTAGCGAACTAGCAATTGCCACAGACTCTAACT ATGCTGGATCAATGGCTTTCGCTCTTGGTTGTATCCACCGCAGCGCAGGAGGAATGGCACTGTCTACTTTAGTGCCTGCATCCGTGGCCTCATTGTCGAC GTTAGCCAAAAGTCCCATCACCGGTTTACAGATTTGGTCACTGCATGGACTTCTTTTAACCATTGAAGATGCAGGATTCTCTTATGTATCTCATGTCCAG GCGACACTTGGCCTTGCTACAGATATTCTATTATCTGAAGAAAATGGATTGGTTGACCTTCAACAAGGTGTTGCCCGCCTTATAAATGCCATTGTTGCTG TTCTTGGCCCGGAGCTTGCCCCTGGCAGCATTTTCTTTTCACGCTGCAAGTCTGTCATTGCTGAGATAAGCTCCTGGCATGAGACAGCAACGCTACTCGA GAGCGTTCGGTTCACTCAGCAACTTGTCCTATTTGCCCCACAAGCTGTTTCGGTGCACTCTCATGTGCAAACTCTTCTCTCCACTTTGTCCTCAAGACAG CCAACCTTAAGACATGTTGCTGTCTCCACCCTGAGGCATCTCATTGAAAAGGACCCGGTTTCAGTTATTGATGAACAGATAGAAGATACGTTGTTTCACA TGCTAGATGAGGAAACTGATTCTGAGATTGGGAATCTGGTACGTGGCACTCTAATGAGATTACTCCGTTCCTCCTGTCCCTCAAAGCCATCCCACTGGAT TTCAGTATGTCGTAAAATGGTTCTCGCTACATCAGCAACAAGCGATGTAGAAAGAAATGACGTGGGAAATAATTCTCTTGGTGGTCTAGACAGTGAGTCA AAGCAATATGGAGAGGATGATGAAGATATGGTATCTAACTCCAATGGGACATCGGTACCTGGATATGAATCTGGAACCTCTGCTGAAAATCACAAGAGAG TCAAGCAGCTCAGATACCGGACCAGAGTCTTCGCTGCTGAATGCCTGAGTTGTCTACCTGATGCTGTGGGAAAAAGCACTGCTCATTTTGACCTATCCTT GGCGAGGGGATCAGGTAATGAATCAAGGAATGGGGATTGGCTTGTCCTCCATCTTCAAGATCTAATTTCACTTGCTTATCAGATCAGCACCATCCAGTTT GAGAACATGCGTCCAATTGGCGTGGCACTTTTAAGTACCATTGTGGACAAGTTTGAAGCTGTTTCTGATCCAGAACTTCCAGGTCACGTTCTCTTGGAAC AGTACCAGGCACAATTAGTATCCGCTGTACGTACTGCATTAGATGTATCTTCTGGCCCTATACTTCTGGAGGCGGGTCTGCAATTGGCAACAAAGATCAA AATACGGCTTCTCGCTGCTCATGCCTCCCTCAAATGTTATGCTTACGCTTTTTTGAGGAGGCATCAAAGTGGAGTGCCAGATGAATATTTAGCACTATTA CCACTGTTTTCCAAGAATTCAAGCATGTTGGGGAAGTACTGGATCCATGTGCTGAAGGATTACAGTTACGTTTGCTTACAATTGAATATAAAGAAAAAAT GGAATCTCTTTGATGGAATTCAATCCCCTCTGGTATTAGCTCAACTGCAGCCAATTTTGGAAGAAGTTTGGCCAATAATTTTGCAAGCGCTTGCACTGGA TGCAGTTCCTTCAAATTTTGATGAGGATAATGCATCGAAAAGTAGCTTGATATCAGGTTATACCATGGTTGAATTGAACATGGAAGACTATCATTTTGTT TGGGGATTTGCTCTGCTTGTCCTATTCCAGCGACATCATACTAGCCAGCGTAGAAGAATAATACCAGTAACTTCGACAAAAGATACACATACACGTGGTA CTGATTCGGTTGTTGATGATAAAACTTTGGTGACCTGGAAGTTGCATGAAGTAGTTCTTCCAGTTTTCCAGTTTCTTTCAACTCACAGATTCTTCACTGC TGGGTTTCTTACTGTGGATGTTTGCAAAGAATTGCTGCAGGTGGTTTTCTCATATTCTATTTACATGGACAGCTCATGGAACAGTCTTGCATTATCAGTT CTGTCACAGATTATCGAGAACTGCCCAACAGATTTCCTTAAAGAAGAAAGTATTGCTAATCTGGTCATTGAACTTATTTTGGTGTACATCTTCAACATTT TCAGAAGTTCTGGAGTTTCTTCAGAGCCTTCAAACTGGGAAGACTTGGCATCTTCAATATTCAATACAGCAAAGACCCTTGTTAGTCGCCATGACATAAA GATACAGGGTCAATTGAAGCCTACAGTGTTGGCATTCACATTAATCAGCTGCAAATGTGTTAGAGAAGCAACAAGCGAGGTGCACTTTTCAACAATCAAA GATTTTTCTAAGTCAACTAGTCCCTTGCTGAAGGCCCTTGTCAAAGATTCTTTGAAACTAGGGGATGACTGTCTGAGAGCTTTCCTGGGAACCTCTCAGC ACACTATTAGTGCACTGACCAAGGATTGCATCAAGGGCTTGCATCTTCTGAAGGATAGGAGCTCTGAATTACGCAAGCTACTTCGATCGAAGCTTTGTTT CTCTATTGAGCAAACTGTGTTGATTGCCAAACTAGCTTACGAGTTTTGTCATGTCGAAGAAGTAGCAGAAAAAAATTCCATATGCCTCTCAGTTTTCAGG CGTTGTACCGACTGTCTCCACATCATGCTCAGTGATTCTGATCTGCAGGTACAAGTAATTGGACTACAAGTGCTGAAGAGTCTCGTACAAAAGAGCAGCA ATGTAGATGACAGAGTATTCCTCGTACTTCTCAGCGGAGAAGTTATCGGGGATATTTTTACAATAATTCAGACAACGTTGAAGAAACCTTTAAGTAAAGG ATCAGTTGCCGTCCTTCCCGACTGCTTGAGATTCCTGCTGCTTCTGCAAACTCTCTCAACATCCAGTGAAAGTCAAAGAAGTTCGATGGTTTTATTTCTA AGCGCTGTTATTACGGTCTTTTTGTCAGCGGAGGATGATTATTCTCAGGAACTTGATGATGTGAAAGGCTTAGCTGTTAAGCTGGTGTCCCAAGTTGCTC AAATTCCTTCATCCGCTGCCCACTTTAAAGACGTCTTATTATCTATGTCCGTAGCACATCGGCAGCTGCTCCAGGGAATTATTCGTGCATCAGTAACGCA GGATCACAATGCCTCTCTGTCAAAGTCGGTAGCCCCACTGGAAATAAAATTACCATTGCCAAAAGATTCCTTTCACCCGTCGCCTGTGAAACTACCAGAA ACAAGTCCTGCAAAATCTTCTGTACCTGCTGAAACTTCTGTTCACGATCCGAGCGAAGACGTCACAGAAGAGGATGACGATGAAGACGAAGAAGATGATG ACTGGGATGCGTTTCAGTCAATCCCTGCCTCCAGCAACGTAGCTGTGGATGAATCAAAAGCACACAATAGTGATACCGAAGAACCTCGTAGAGAAATCGA ATCCGATAGCGAAGCATCTCAATCTAGCATTAATGGTGAAGAAATCGGCATATTGGGTGATGATGAGTCTAGTACTGCAGAAATGAGTTCCATCATCCGG GCAGGCGACGATTATGTTGATAATCCCCATAATCTTCTGTCTGTTGACGAAGGATCAGGTGATCTTGAAGTAGAACACCATCAGGATATACAGAACCAAA GCAATGCTGCAGAGCTGACGGTAGACTCACCTCACAGGAAAAACTCGGACGGTGAAGGTCAGCTCGAAGAAAGCGACAAAGACAAGTATGATGAAGCTGA AGGTACCGCATTAGTAACAACATATGAGAACAAGGGCAATGACATCAATCAAGATAATGAAGATAGTTCGACATCGCCCAACGAGAAAGATCAGGAACCA GAGAGTCAGTCTGACAGCAGGTCGCCTCCGGAAACTGAGGAAGTTGAGAGGGCTACCTGA
AA sequence Show only first row Show all	>Lus10033549 pacid=23143378 polypeptide=Lus10033549 locus=Lus10033549.g ID=Lus10033549.BGIv1.0 annot-version=v1.0 MAKSYVRESIPLSRFGVLVAQMESLVASASQKLPDPLLCFDLLSDLISAIEEEPQESILLWQRKCEDALYALLALGARRPVRHLASVAMANIISKGDSIS IYSRASTLQGFLADGKKNEPQKVAGAAQCLGELYRHFGRKITSGVLETTSIATKLMKFNEEFVRQEALLMLQKALEGSGGSAMSSAYTEAYRIITRIGVA DKSPIVRIAAACCLKAFASVGGPGLGAAELESLASYCGRASLLGHLLFSVLLLRILFHPSESHLLMLWVGLPSCSWNDSRSTDTDLQNYGVQVMEMLRTD GSVDAHAFACVLYILRVGVTDQMTEPTQRGFLVFLGNRSSGASPSMKIAALRTMSYTLNTLGEVPIEFKEVFDYAVLDAVSHPLQLVRVEAALTLRVLAE VDPTCVGGLVSYGVTTLSALRETILFGKGTTVKSELDSLHGQATVLAALVAVSPKLPLGYPARLPNSVLEVSKRMLTESSRNPTAATAVKEAGWLLLSSL LSSMPKEELEDQVFDILSLWATLFSKSPEQETNQGGDLTSKICVWSAAVDALAAFVRCFITSSSADNGILLQPVLVYLSSALSYISVLQRKDQSKIKPAM DIFIIRTLMAYRTLPDPMAFKRDHTQMIQLCTIPFRDPSKYEESSCLRLLLDKKDAWLGPWIPARDWLEDELRAFQGGADGLVPCIWESELSSFPQPETI NKMLVNQMLLCFGLMFSTQESNGMLSLLQMIEQCLKAGRKQTWHAASLSNICVGLIAGLKALIALRPQSLGPEILTIAHAIFQSILAEGEICASQRRASA EGLGLLARLGNDLFTAKMTRSLLSELAIATDSNYAGSMAFALGCIHRSAGGMALSTLVPASVASLSTLAKSPITGLQIWSLHGLLLTIEDAGFSYVSHVQ ATLGLATDILLSEENGLVDLQQGVARLINAIVAVLGPELAPGSIFFSRCKSVIAEISSWHETATLLESVRFTQQLVLFAPQAVSVHSHVQTLLSTLSSRQ PTLRHVAVSTLRHLIEKDPVSVIDEQIEDTLFHMLDEETDSEIGNLVRGTLMRLLRSSCPSKPSHWISVCRKMVLATSATSDVERNDVGNNSLGGLDSES KQYGEDDEDMVSNSNGTSVPGYESGTSAENHKRVKQLRYRTRVFAAECLSCLPDAVGKSTAHFDLSLARGSGNESRNGDWLVLHLQDLISLAYQISTIQF ENMRPIGVALLSTIVDKFEAVSDPELPGHVLLEQYQAQLVSAVRTALDVSSGPILLEAGLQLATKIKIRLLAAHASLKCYAYAFLRRHQSGVPDEYLALL PLFSKNSSMLGKYWIHVLKDYSYVCLQLNIKKKWNLFDGIQSPLVLAQLQPILEEVWPIILQALALDAVPSNFDEDNASKSSLISGYTMVELNMEDYHFV WGFALLVLFQRHHTSQRRRIIPVTSTKDTHTRGTDSVVDDKTLVTWKLHEVVLPVFQFLSTHRFFTAGFLTVDVCKELLQVVFSYSIYMDSSWNSLALSV LSQIIENCPTDFLKEESIANLVIELILVYIFNIFRSSGVSSEPSNWEDLASSIFNTAKTLVSRHDIKIQGQLKPTVLAFTLISCKCVREATSEVHFSTIK DFSKSTSPLLKALVKDSLKLGDDCLRAFLGTSQHTISALTKDCIKGLHLLKDRSSELRKLLRSKLCFSIEQTVLIAKLAYEFCHVEEVAEKNSICLSVFR RCTDCLHIMLSDSDLQVQVIGLQVLKSLVQKSSNVDDRVFLVLLSGEVIGDIFTIIQTTLKKPLSKGSVAVLPDCLRFLLLLQTLSTSSESQRSSMVLFL SAVITVFLSAEDDYSQELDDVKGLAVKLVSQVAQIPSSAAHFKDVLLSMSVAHRQLLQGIIRASVTQDHNASLSKSVAPLEIKLPLPKDSFHPSPVKLPE TSPAKSSVPAETSVHDPSEDVTEEDDDEDEEDDDWDAFQSIPASSNVAVDESKAHNSDTEEPRREIESDSEASQSSINGEEIGILGDDESSTAEMSSIIR AGDDYVDNPHNLLSVDEGSGDLEVEHHQDIQNQSNAAELTVDSPHRKNSDGEGQLEESDKDKYDEAEGTALVTTYENKGNDINQDNEDSSTSPNEKDQEP ESQSDSRSPPETEEVERAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	0	1
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	2.0	0.9229
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	2.8	0.9356
AT2G48060			unknown protein		Lus10008175 [exp]	4.2	0.8882
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	5.1	0.8791
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	8.8	0.8859
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10022270 [exp]	10.2	0.8473
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	11.0	0.8941
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10019489 [exp]	11.6	0.8778
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	15.3	0.8734
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	15.4	0.8353

Compare expression of checked genes

Lus10033549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.