Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02280 122 / 4e-33 Flavodoxin family protein (.1) AT3G24710 69 / 1e-16 unknown protein AT4G24520 66 / 1e-13 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 62 / 3e-12 AR2, ATR2 P450 reductase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017589 [exp] 195 / 4e-60 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10019996 [exp] 69 / 2e-14 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 69 / 2e-14 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 66 / 2e-13 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 66 / 2e-13 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101100 [exp] 140 / 7e-40 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.011G027100 [exp] 110 / 4e-32 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1) Potri.002G106566 [exp] 67 / 5e-14 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.018G092100 [exp] 67 / 1e-13 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.005G153800 [exp] 66 / 1e-13 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 66 / 3e-13 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033550 pacid=23143279 polypeptide=Lus10033550 locus=Lus10033550.g ID=Lus10033550.BGIv1.0 annot-version=v1.0 ATGACTGATGATGATGATGATAGGTATGATTATGATCCTGCTGAGTTCTACCATTGTCCTACTCCCCTTATTTTTACAGGGGGACTTGTGGCTGTCCCAG AACCGGACGATGGATTGCTTTCAGAAGTGAGAGGCGGAGGCTTCTACGTTGCGTTTTCGAGAGACCAGGATCGGAAGGTTTACGTGCAGCACAAGATGTT GGAACAGAGCAGGATGATATGGAAGATGGTTTCGGAAGGTGGTGCTGCAGTGTATGTAGCTGGCTCCTCGACGAAAATGCCGTCTGATGTGATGTCGGCT GTGGAAGAGATCATGGCGAGAGAGGGTGGAGTGCCGAAAGAGACGGCTGCAACGGTGATGAGGAGGTTGGAGAGAGATGGTAAATACCGTGTTGAAGCAT GGTCTTGA
AA sequence Show only first row Show all	>Lus10033550 pacid=23143279 polypeptide=Lus10033550 locus=Lus10033550.g ID=Lus10033550.BGIv1.0 annot-version=v1.0 MTDDDDDRYDYDPAEFYHCPTPLIFTGGLVAVPEPDDGLLSEVRGGGFYVAFSRDQDRKVYVQHKMLEQSRMIWKMVSEGGAAVYVAGSSTKMPSDVMSA VEEIMAREGGVPKETAATVMRRLERDGKYRVEAWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02280			Flavodoxin family protein (.1)		Lus10033550 [exp]	0	1
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019784 [exp]	1.0	0.6555
AT5G02930			F-box/RNI-like superfamily pro...		Lus10040452 [exp]	11.2	0.6373
					Lus10036275 [exp]	18.7	0.6010
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10000981 [exp]	22.4	0.5784
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	26.1	0.5590
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10028418 [exp]	26.8	0.5764
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	35.0	0.5718
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	37.3	0.5656
					Lus10022857 [exp]	41.2	0.5299
					Lus10029472 [exp]	43.0	0.5414

Compare expression of checked genes

Lus10033550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.