Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15760 116 / 4e-33 Ribosomal protein PSRP-3/Ycf65 (.1) AT1G68590 115 / 4e-33 Ribosomal protein PSRP-3/Ycf65 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017590 [exp] 293 / 6e-103 AT5G15760 116 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1) Lus10034302 [exp] 119 / 4e-34 AT1G68590 173 / 2e-55 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10041469 [exp] 118 / 6e-34 AT1G68590 175 / 2e-56 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10035036 [exp] 116 / 2e-33 AT1G68590 181 / 9e-59 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10021693 [exp] 116 / 4e-33 AT1G68590 178 / 9e-58 Ribosomal protein PSRP-3/Ycf65 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101000 [exp] 128 / 4e-38 AT1G68590 136 / 3e-41 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.010G127300 [exp] 123 / 6e-36 AT1G68590 188 / 2e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.008G118700 [exp] 121 / 3e-35 AT1G68590 187 / 4e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04839 [flax] [poplar] PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Representative CDS sequence Show only first row Show all	>Lus10033551 pacid=23143445 polypeptide=Lus10033551 locus=Lus10033551.g ID=Lus10033551.BGIv1.0 annot-version=v1.0 ATGGCAGCGAAGCTAAACCCAACGCATACCTCTCTTAAACCCTTATCCCAATTTCTTCCTTCTTCCCCTCAACACTCACAAGCACAATTCCTACGCTTTC TCTTCCGTAAACCCCATAAACTCTCAATTCTCCATTCCTCAATCCTCATACGCACACCCATTCTCGCCATACCAAAACTCAAGCTTTCAGCATCGCCAGC TGAGCAGGTTGTTCCTAGCCAGATAGACGCATCCGCTTCTAAACAGCAACTCAGAGTAGTAGTGAAGCCAATGGAGAAACCAAGGATAGTGTTGCAGTTC CTGTGGAAGGAAGACGTAATCGGTGTGGCGTTGAACCAAGTGATACCCAGACATGGTACAATTCCTTTAACGCCTTACCATTTTTGGCCGCATCAAGACG CCTGCGAGGAGCTTAAGGTGTTTCTGAAGAGCAAGCCATGGATTAGCCACAAGCAAATGAGAGTCCTCCTAAATCAGCTCACGGAACTCATCAACTCCTC TGGGAAAAAAGGCGGCGAGTGA
AA sequence Show only first row Show all	>Lus10033551 pacid=23143445 polypeptide=Lus10033551 locus=Lus10033551.g ID=Lus10033551.BGIv1.0 annot-version=v1.0 MAAKLNPTHTSLKPLSQFLPSSPQHSQAQFLRFLFRKPHKLSILHSSILIRTPILAIPKLKLSASPAEQVVPSQIDASASKQQLRVVVKPMEKPRIVLQF LWKEDVIGVALNQVIPRHGTIPLTPYHFWPHQDACEELKVFLKSKPWISHKQMRVLLNQLTELINSSGKKGGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15760			Ribosomal protein PSRP-3/Ycf65...		Lus10033551 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	14.5	0.8680
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	26.5	0.8596
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	26.8	0.8600
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10028194 [exp]	34.5	0.8580
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	41.4	0.8536
					Lus10031949 [exp]	41.8	0.7875
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	42.2	0.8531
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	43.6	0.8531
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	44.2	0.8403
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	49.5	0.8502

Compare expression of checked genes

Lus10033551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.