Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13340 206 / 4e-63 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 139 / 5e-37 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 132 / 3e-34 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 126 / 1e-33 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 123 / 9e-31 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 115 / 5e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G79910 106 / 1e-25 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 102 / 5e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 100 / 7e-24 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 92 / 3e-20 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017591 [exp] 357 / 2e-124 AT1G13340 158 / 3e-46 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041468 [exp] 238 / 4e-75 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 231 / 3e-72 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017592 [exp] 204 / 5e-63 AT1G13340 178 / 3e-52 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033553 [exp] 142 / 4e-39 AT1G13340 107 / 6e-26 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 137 / 2e-36 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 138 / 7e-36 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 133 / 5e-35 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 132 / 1e-34 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127000 [exp] 241 / 5e-76 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 235 / 6e-76 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 236 / 1e-72 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 143 / 1e-37 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.007G059800 [exp] 136 / 4e-36 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 135 / 2e-35 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 133 / 2e-34 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 129 / 2e-34 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.004G038600 [exp] 103 / 3e-24 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.011G122800 [exp] 97 / 4e-22 AT2G14830 137 / 5e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10033552 pacid=23143304 polypeptide=Lus10033552 locus=Lus10033552.g ID=Lus10033552.BGIv1.0 annot-version=v1.0 ATGGGTAGGAAGCTGGATGCTCTTCTAGGAAGAAACTTCAGAGCATCCAAGTTCAAGGCTTTATCCACCGTTGCAATCTCAAGGATCGTCATTCTCAAAA GGCAGAGGTTTTCCAGGTTTTCCCAGGCAAAGTCTGATGTTATTGAACTCCTCAATCTTGACCAGCACGACAGAGCTCTCATTCGCGTTGAGCTTGTGGT CAAGGATCGTCTTATGCTTGATGCATTCGACATGATTCGAAGCTACTGCGAGTTGCTGAAAGAAAGTGTCTTGCTTCTCCAAAAGACCAAAGAATGCCCA GATGAGCTTAAGGAGTCAATCTCAAGCTTGATCTTTGCGTCGTCAAGGTGTGCAGAGTTCCCTGAGCTCCAAGAGATGCGCGCGGTTTTCCAAGTGCGAT TCGGGAAGGAGTTTGTTGCTCGCGCCATCGAGCTGCGAAACAATTGTGCTGTGAATCCCAAGATCATCCAGAAATTATCAGCAAGACAGCCGAGTTTAGA AAGCAGGATTGAAGTGCTGAGAAGCATTGCCTCTGAGGTTAATATCATCCTAGATTTGAAACTTCATGTTCAACCGCAGAAACCTGATGTGTCTCGAAAG CAAGAACCTGAGGAGTCAGATGCATGGTTGGAGGACAGTGCTCATAAAGCTGAGGCTGCTCAATCGCAATCTTCAGATTCAGATGAAGAGTTCTCTGAGT CGCTGAAAGCAAAAAACAAGTATAGAGATGCAGCTGCTGCTGCCAAGGAAGCTTTTCAATCAGCAGCTTATGCAGCCATGGCTGCTAGAGCTGCACTCAA GCTTTCAAGATCCGAATCCAACCATGGTGGTTCAGGACATCATGGAGGAACCATGGACAACCAAATCATTGTTTACGAGGCCTATCCGGAAGAAGAAGAA GAAAGCCACCAGCTACAGAGAGACACTCCAGCAGAGCCCGACCAACAGAAATGGGAACACAAGCATATCGGAGATGGCTTTGCTGCTACAGATGTAAATA CCCTCAACTGGAATCAGCTTACAGTTTCTTCTGGAGGCAAGTAG
AA sequence Show only first row Show all	>Lus10033552 pacid=23143304 polypeptide=Lus10033552 locus=Lus10033552.g ID=Lus10033552.BGIv1.0 annot-version=v1.0 MGRKLDALLGRNFRASKFKALSTVAISRIVILKRQRFSRFSQAKSDVIELLNLDQHDRALIRVELVVKDRLMLDAFDMIRSYCELLKESVLLLQKTKECP DELKESISSLIFASSRCAEFPELQEMRAVFQVRFGKEFVARAIELRNNCAVNPKIIQKLSARQPSLESRIEVLRSIASEVNIILDLKLHVQPQKPDVSRK QEPEESDAWLEDSAHKAEAAQSQSSDSDEEFSESLKAKNKYRDAAAAAKEAFQSAAYAAMAARAALKLSRSESNHGGSGHHGGTMDNQIIVYEAYPEEEE ESHQLQRDTPAEPDQQKWEHKHIGDGFAATDVNTLNWNQLTVSSGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	0	1
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	2.4	0.9863
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	3.2	0.9869
					Lus10015339 [exp]	3.9	0.9847
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	4.9	0.9849
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016995 [exp]	8.1	0.9827
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	8.8	0.9860
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	12.4	0.9839
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10038710 [exp]	15.3	0.9460
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	15.9	0.9843
AT1G11340			S-locus lectin protein kinase ...		Lus10030767 [exp]	16.2	0.9602

Compare expression of checked genes

Lus10033552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.