Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13340 106 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 99 / 9e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT4G35730 98 / 2e-22 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 98 / 3e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 92 / 7e-20 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 84 / 2e-17 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G79910 67 / 5e-12 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 64 / 4e-11 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 58 / 3e-09 Regulator of Vps4 activity in the MVB pathway protein (.1) AT3G15490 54 / 3e-08 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017592 [exp] 402 / 7e-140 AT1G13340 178 / 3e-52 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 142 / 4e-39 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041468 [exp] 143 / 1e-38 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 139 / 3e-37 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017591 [exp] 103 / 2e-25 AT1G13340 158 / 3e-46 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 98 / 5e-23 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041836 [exp] 99 / 1e-22 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 97 / 7e-22 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 96 / 2e-21 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113900 [exp] 139 / 1e-38 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G127000 [exp] 141 / 7e-38 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 140 / 1e-36 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 103 / 3e-24 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 101 / 3e-24 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G117100 [exp] 99 / 1e-22 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 99 / 3e-22 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.007G059800 [exp] 97 / 4e-22 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G038600 [exp] 73 / 8e-14 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G135700 [exp] 71 / 5e-13 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10033553 pacid=23143520 polypeptide=Lus10033553 locus=Lus10033553.g ID=Lus10033553.BGIv1.0 annot-version=v1.0 ATGCGTGCACGTCGTATAATCTTGAAGAACTCTAAAATTAAATGTGTTCAATGTAAAGTGGTGTTAATTGAGATGAATAATCTTGTTACAATCCAAAAGA AGTTAGTACCGTGTCACAACAAGACCTGGAATTTCTGGTCTAGTGATTCACCGGCGATGTGGATCTTTGGTCTTAGGTACCGCTCAAGTCTTCTCGCATT TCATGGATCTACTGTTACTGGAATTTCCGGCCATTCGTCAAGCTTTTTTGGTGGCTCGAGGAGCAGAACTATGTTGGATTCCTATGCCATGATCGACAAC TACTGCCATCTCCTCAGAGAAAGGCTCGTCGTCATCGAGACCAATTATTCCAAGGAATGCCCAGATGAGCTGAAGGAGGCAATAGCAAGTTTGATCTTTG CGGCGGCAAGGTGTGGGGAATTGCCGGAGTTGCAAGAGATGAAGAGGCTATTCACTTGTAGATACGGCAAGGAATTCACCACTGGCGCCGCTGAAATGCG GAATAACTGTGGAGTCCACCCTAGGATTGCGAAGAAGCTGTCGACCAAGCAACCAAGCCTGGAAAGCAAAATCATTGCGCTAAAGGAAATAGCTCCAAAG TGTGAACTCATCCCGCACTTAGATGAAGTGGCCTTTTCACTCCCCAAATCACCACCTGCTAGCAGTCATAATTCTCAACATCATCACGCCATTGTGGTCG ACGAGACGAACATGCACGACTCCGCTGCATCATCTGCACGGTTTGTTCGGACGCCATCGAGGAGCTACTCCGAGAGGTACCCGAACTTCGAGGCTGCAGT CCACGCTGCCTGTGAGCTGTCAGCTCAGGCCGCGGCTGCAGCCAGAGCTGCCATGGAGCTCTCCTCTAGGCCACCCACTGACGGCGGTGATTCGAGTTCG GATAGGAATAATGGTGTTAGTTCAGTATTGAAGTTACTGAGGAGGAGCAATACTACTTGTGTAGCTGCAGATGGTTTTGATGGCGCCAATGGGATATCTA GGGTTGTTGTGGCATCATCATCGGACTATGTTCCCAAGTTGTTCAAGAGAAGTTCTAGTGCCGTTACGACATTGTTCGATCTTCACCCTCCGAATATTGG AAGGTGA
AA sequence Show only first row Show all	>Lus10033553 pacid=23143520 polypeptide=Lus10033553 locus=Lus10033553.g ID=Lus10033553.BGIv1.0 annot-version=v1.0 MRARRIILKNSKIKCVQCKVVLIEMNNLVTIQKKLVPCHNKTWNFWSSDSPAMWIFGLRYRSSLLAFHGSTVTGISGHSSSFFGGSRSRTMLDSYAMIDN YCHLLRERLVVIETNYSKECPDELKEAIASLIFAAARCGELPELQEMKRLFTCRYGKEFTTGAAEMRNNCGVHPRIAKKLSTKQPSLESKIIALKEIAPK CELIPHLDEVAFSLPKSPPASSHNSQHHHAIVVDETNMHDSAASSARFVRTPSRSYSERYPNFEAAVHAACELSAQAAAAARAAMELSSRPPTDGGDSSS DRNNGVSSVLKLLRRSNTTCVAADGFDGANGISRVVVASSSDYVPKLFKRSSSAVTTLFDLHPPNIGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13340			Regulator of Vps4 activity in ...		Lus10033553 [exp]	0	1
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	11.6	0.8061
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	13.2	0.8368
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	22.3	0.8145
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	22.6	0.8019
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	25.0	0.7676
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	27.7	0.8143
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	31.6	0.8067
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	42.0	0.7895
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	45.6	0.7995
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	48.0	0.7559

Compare expression of checked genes

Lus10033553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.