Plant FIBer expression Database

Lus10033554 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38460 74 / 4e-16 ALG6, ALG8 glycosyltransferase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017594
[exp]
88 / 7e-21 AT5G38460 682 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G100500
[exp]
53 / 1e-08 AT5G38460 568 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Potri.017G114100
[exp]
52 / 2e-08 AT5G38460 595 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03155 Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence
>Lus10033554 pacid=23143401 polypeptide=Lus10033554 locus=Lus10033554.g ID=Lus10033554.BGIv1.0 annot-version=v1.0
ATGATTCAGCAAATGTTGGCTCCCAGCAGCAAAGGTTTCCTTTACGGGCTGCTGAACAGTTCTCTCTCGTTTTACTTATTTTCGTTCCAAGTACACGAGA
AGTCTATCCTGCTGCCTCTTCTCCCTGCAACATTCCTGGCAATGGAGTTTCCTGATCAGTTCAAGATATTACTCCACTACGCGCTGTTCTCAATGTTCCC
TCTAGTATGCCGAGACAATCTGATCCTGCCATATATTGCTCTGTATGCTCTCTGTATCTACCTCTACAATGCACCCGATGGAAGATACAGATGTGAATTT
TGTGCTCTCTGTAGCAGGACATGTACTTTGAATTTTGTTAGAAGAATATTTTTGCGCAAAGTACTGAATCTACAGACAAAATTTCTAGAGTTTTTTGGAA
CAGTTCCTTTTCTGGACATGCACGCATGA
AA sequence
>Lus10033554 pacid=23143401 polypeptide=Lus10033554 locus=Lus10033554.g ID=Lus10033554.BGIv1.0 annot-version=v1.0
MIQQMLAPSSKGFLYGLLNSSLSFYLFSFQVHEKSILLPLLPATFLAMEFPDQFKILLHYALFSMFPLVCRDNLILPYIALYALCIYLYNAPDGRYRCEF
CALCSRTCTLNFVRRIFLRKVLNLQTKFLEFFGTVPFLDMHA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38460 ALG6, ALG8 glycosyltransferase... Lus10033554
[exp]
0 1
AT1G64870 unknown protein Lus10002022
[exp]
3.9 0.7210
AT1G17930 Aminotransferase-like, plant m... Lus10033415
[exp]
6.5 0.7146
AT5G46795 MSP2 microspore-specific promoter ... Lus10000907
[exp]
12.2 0.5690
AT1G14040 EXS (ERD1/XPR1/SYG1) family pr... Lus10036781
[exp]
16.0 0.6445
AT2G38150 alpha 1,4-glycosyltransferase ... Lus10004828
[exp]
17.9 0.6506
Lus10035698
[exp]
18.1 0.6117
Lus10020479
[exp]
20.3 0.6058
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Lus10030934
[exp]
34.8 0.6142
Lus10013299
[exp]
36.2 0.5483
AT5G25610 ATRD22, RD22 RESPONSIVE TO DESSICATION 22, ... Lus10024706
[exp]
38.6 0.5995

Lus10033554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.