Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 89 / 5e-22 RNA-binding KH domain-containing protein (.1.2) AT1G14170 74 / 8e-17 RNA-binding KH domain-containing protein (.1.2.3) AT5G64390 70 / 3e-15 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 67 / 2e-14 RNA-binding KH domain-containing protein (.1) AT1G51580 57 / 7e-11 RNA-binding KH domain-containing protein (.1) AT5G53060 55 / 5e-10 RNA-binding KH domain-containing protein (.1.2) AT5G09560 52 / 6e-09 RNA-binding KH domain-containing protein (.1) AT4G18375 51 / 9e-09 RNA-binding KH domain-containing protein (.1.2) AT2G03110 46 / 2e-07 RNA binding;nucleic acid binding (.1) AT2G22600 38 / 0.0003 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017596 [exp] 116 / 2e-32 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 89 / 3e-22 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 89 / 8e-22 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 84 / 2e-20 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 84 / 2e-20 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 81 / 3e-19 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 80 / 6e-19 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10033557 [exp] 71 / 8e-16 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10034831 [exp] 66 / 6e-14 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114400 [exp] 143 / 3e-41 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G100201 [exp] 126 / 2e-38 AT5G15270 94 / 1e-22 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 84 / 2e-20 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 82 / 1e-19 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 77 / 7e-18 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 77 / 9e-18 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 72 / 4e-16 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.004G066100 [exp] 71 / 1e-15 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 66 / 5e-14 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.007G116300 [exp] 62 / 9e-13 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10033556 pacid=23143297 polypeptide=Lus10033556 locus=Lus10033556.g ID=Lus10033556.BGIv1.0 annot-version=v1.0 ATGGACTTTCTGCAACTGTTCCAGGCTCTCCGGAACCCTAGATCTCAAACAATAGAAGCAATTCTTCAGCTTCAGAGTAAAACAAGTGAACTTTCTGAAA AGGGAACAATTACTACTAGACTGGTTGTGCCGTCAAACAAAGTTGGTTGTATACTTGGACAAGGCGGGCAAGTTATCAATGAAATGAGGAAGAGGACCCT GGCGGACATTCGGATTTTCTCCAAGGATGATAAACCCAAGTGTGCATCTGATGATGAAGAGCTTATACAGGTGATTATTTTTCTCACTGGTTAA
AA sequence Show only first row Show all	>Lus10033556 pacid=23143297 polypeptide=Lus10033556 locus=Lus10033556.g ID=Lus10033556.BGIv1.0 annot-version=v1.0 MDFLQLFQALRNPRSQTIEAILQLQSKTSELSEKGTITTRLVVPSNKVGCILGQGGQVINEMRKRTLADIRIFSKDDKPKCASDDEELIQVIIFLTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	1.7	0.9070
					Lus10042563 [exp]	2.8	0.8464
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	8.5	0.8450
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	8.9	0.8421
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	9.9	0.8210
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012472 [exp]	14.7	0.7944
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	15.8	0.8230
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	15.9	0.7945
					Lus10026028 [exp]	17.9	0.7610
AT2G48060			unknown protein		Lus10029972 [exp]	18.7	0.7922

Compare expression of checked genes

Lus10033556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.