Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 152 / 2e-41 RNA-binding KH domain-containing protein (.1.2) AT1G14170 125 / 7e-32 RNA-binding KH domain-containing protein (.1.2.3) AT4G18375 119 / 1e-29 RNA-binding KH domain-containing protein (.1.2) AT5G46190 116 / 2e-28 RNA-binding KH domain-containing protein (.1) AT2G03110 95 / 3e-23 RNA binding;nucleic acid binding (.1) AT2G22600 97 / 1e-21 RNA-binding KH domain-containing protein (.1) AT1G51580 96 / 4e-21 RNA-binding KH domain-containing protein (.1) AT5G53060 93 / 2e-20 RNA-binding KH domain-containing protein (.1.2) AT5G64390 77 / 3e-15 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G09560 64 / 7e-11 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017596 [exp] 325 / 4e-109 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 151 / 1e-40 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 149 / 6e-40 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 141 / 8e-37 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 130 / 5e-33 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10023300 [exp] 122 / 4e-30 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 117 / 2e-28 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10028237 [exp] 105 / 2e-24 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 102 / 3e-23 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114400 [exp] 369 / 7e-122 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 167 / 1e-46 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 159 / 7e-44 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 144 / 3e-38 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 143 / 8e-38 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 120 / 2e-29 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 114 / 2e-27 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 112 / 8e-27 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 103 / 9e-24 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 98 / 6e-22 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10033557 pacid=23143536 polypeptide=Lus10033557 locus=Lus10033557.g ID=Lus10033557.BGIv1.0 annot-version=v1.0 ATGGAGGGCAACAAACGGAAATTGTTTGATAAGCAGCAAAATAAACAATTCAAGCATAAAGGTCCCAACAAGAAAATGAAATGGACCAACTCGAGTGGTC AATCTCCTTTGAGTTCACTACCCTCTGATACTACGATGTACCGCGTACTCTGTCCTTCAAAGAAAATCGGAAGTGTTATTGGAAAGGGTGGCAGCATCAT TAAAGCTCTAAGAGAAGAAACACAATCGAAGATTAATGTTGATGATTCTGTTCCGAATTCAGACGAGAGAGTGATTACCATCTATAGTTCTCCTGCAAAG GTTTCTACGACTGATACTAATGATGAGAAGTCATCTGCGGAGAATGAGCTGTGGGTCATGGAACCCCATTGTGCTGCCCAGGATGCTCTCTTGAAAGTTC ATAAGCTTATCATAGAGGATGATCGTTCCAGCGGCATGCCATCTGATGACGAGAATGAAACCGGTGTCATCACAGTGCGGCTTCTTGTTCCAAATAATAT GGTAGGATGCATATTAGGGAAAGGTGGTGATGTTATCAAGAGATTGCGTAGTGAGACTGATGCAAAAATTCGCATTTTCCCTCCAGATCAACTTCCTCCC TGTGCAATGAGTACTGACGAATTGGTCCAGATATCTGGGAAAATGGATGTGGTTACAAGGGCTTTGTTTGAAGTTTCCACTTTACTGCATCAAAATCCAC GAAAAGGTGAACCAGTAGGCGGTCAAAGTTTATATCTTCCCCGGGGTCCAATAAACAATATGCTTCCACCAGAACATCCAATGTGGCCTCGTAGGAGCTC TCCCAATAGGATGCTTCCCTTGCCATGGATTGGAGGCGATCAGCCATCAAGACTTACACCAAGTGGTTTCAATGATGTTCCTCCAAGACATGGAGATGAA CCTTCAGCGGAGTTTTCAATGAAAATTTTGTGTGCTGTTGGTAAAATTGGTGGAGTAATTGGCAAGGGAGGTTCTAATGTAAAGTTCATTCAGCAGGAAA CAGGAGCTAGCATTCATGTAGAGGATGCTCCATCCAAATTGGATGAGCGTGCCATTCGTGTCTGTGCTGTTGAGGTATGCTTGTTACTTAATTGTGAAAC ATATCTTCAGACTTTTATCCTACTGCAGTTCTGA
AA sequence Show only first row Show all	>Lus10033557 pacid=23143536 polypeptide=Lus10033557 locus=Lus10033557.g ID=Lus10033557.BGIv1.0 annot-version=v1.0 MEGNKRKLFDKQQNKQFKHKGPNKKMKWTNSSGQSPLSSLPSDTTMYRVLCPSKKIGSVIGKGGSIIKALREETQSKINVDDSVPNSDERVITIYSSPAK VSTTDTNDEKSSAENELWVMEPHCAAQDALLKVHKLIIEDDRSSGMPSDDENETGVITVRLLVPNNMVGCILGKGGDVIKRLRSETDAKIRIFPPDQLPP CAMSTDELVQISGKMDVVTRALFEVSTLLHQNPRKGEPVGGQSLYLPRGPINNMLPPEHPMWPRRSSPNRMLPLPWIGGDQPSRLTPSGFNDVPPRHGDE PSAEFSMKILCAVGKIGGVIGKGGSNVKFIQQETGASIHVEDAPSKLDERAIRVCAVEVCLLLNCETYLQTFILLQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10033557 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Lus10033556 [exp]	1.7	0.9070
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	2.6	0.8982
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	3.6	0.9073
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	4.5	0.9068
AT5G36930			Disease resistance protein (TI...		Lus10007836 [exp]	4.5	0.8776
AT5G07320		APC3	ATP/phosphate carrier 3, Mitoc...		Lus10032523 [exp]	8.4	0.8845
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10038534 [exp]	9.8	0.8958
AT5G24350			unknown protein		Lus10007768 [exp]	11.8	0.9073
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	13.0	0.8912
AT1G79190			ARM repeat superfamily protein...		Lus10001243 [exp]	15.9	0.8698

Compare expression of checked genes

Lus10033557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.