Plant FIBer expression Database

Lus10033559 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57510 69 / 2e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017598
[exp]
183 / 2e-60 AT5G57510 80 / 6e-20 unknown protein
Lus10009171
[exp]
127 / 3e-38 AT5G57510 88 / 6e-23 unknown protein
Lus10028472
[exp]
119 / 5e-35 AT5G57510 87 / 1e-22 unknown protein
Lus10026228
[exp]
50 / 3e-08 AT5G57510 62 / 6e-13 unknown protein
Lus10042441
[exp]
49 / 8e-08 AT5G57510 64 / 9e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G094100
[exp]
82 / 1e-20 AT5G57510 107 / 5e-31 unknown protein
Potri.006G273566
[exp]
61 / 1e-12 AT5G57510 75 / 4e-18 unknown protein
Potri.006G273500
[exp]
61 / 1e-12 AT5G57510 75 / 4e-18 unknown protein
Potri.018G006800
[exp]
42 / 1e-05 AT5G57510 61 / 1e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10033559 pacid=23143344 polypeptide=Lus10033559 locus=Lus10033559.g ID=Lus10033559.BGIv1.0 annot-version=v1.0
ATGTCCGGAAGCAAAGCAGAGCATCGGCGGTGGGCTCCTTTGGAGCGACTGAAGAACGCAGTGAAGAAAATCAAAGTCCTCCTCAACTTCGATCTTCACG
TTTGGCGATTTGCGGGGTCTCTCCTCGCCGCCGGATCTTCCTCCTCCAGGGCGATTAGCTTCGTCGGCGCCGAGGACCGGCCAGGATTGACGACGGCGAC
GAGTACTGATTCTTCTGATTCCGAATGTTGGTATTCCCCTAGGGGAAATTTGACGTCCCCTGCGACGTCGTTGAAGTCGGGGCTTCGTCGAACGATCAGC
CGCGGGTTGTCGATGGAGGATGACGTGGACAAGAGGGCAGAGATGTTCATAGTGAATTTCCGGCGGCAGCTTCAGATTGAGCGTCAGATTTCCTTGGAGC
TTATGTACTGTCTGGAGAAAACGTGA
AA sequence
>Lus10033559 pacid=23143344 polypeptide=Lus10033559 locus=Lus10033559.g ID=Lus10033559.BGIv1.0 annot-version=v1.0
MSGSKAEHRRWAPLERLKNAVKKIKVLLNFDLHVWRFAGSLLAAGSSSSRAISFVGAEDRPGLTTATSTDSSDSECWYSPRGNLTSPATSLKSGLRRTIS
RGLSMEDDVDKRAEMFIVNFRRQLQIERQISLELMYCLEKT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57510 unknown protein Lus10033559
[exp]
0 1
AT1G14550 Peroxidase superfamily protein... Lus10024208
[exp]
1.0 0.9823
AT5G44440 FAD-binding Berberine family p... Lus10012641
[exp]
3.2 0.9681
AT3G15980 Coatomer, beta' subunit (.1.2.... Lus10026094
[exp]
6.0 0.9630
AT5G40690 unknown protein Lus10015261
[exp]
7.4 0.9398
AT3G26210 CYP71B23 "cytochrome P450, family 71, s... Lus10030708
[exp]
12.0 0.9663
AT5G39130 RmlC-like cupins superfamily p... Lus10000622
[exp]
13.1 0.9556
AT2G42360 RING/U-box superfamily protein... Lus10005105
[exp]
14.5 0.9665
AT4G23690 Disease resistance-responsive ... Lus10024714
[exp]
17.5 0.9652
AT4G23690 Disease resistance-responsive ... Lus10024715
[exp]
18.0 0.9658
AT3G26330 CYP71B37 "cytochrome P450, family 71, s... Lus10033633
[exp]
24.0 0.9658

Lus10033559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.