Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16110 128 / 4e-37 unknown protein AT3G02555 115 / 4e-33 unknown protein AT1G68490 109 / 2e-30 unknown protein AT1G13390 103 / 2e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017599 [exp] 285 / 7e-100 AT5G16110 137 / 8e-41 unknown protein Lus10028474 [exp] 228 / 2e-77 AT5G16110 160 / 8e-50 unknown protein Lus10009170 [exp] 224 / 8e-76 AT5G16110 160 / 7e-50 unknown protein Lus10041444 [exp] 94 / 4e-24 AT1G68490 180 / 5e-58 unknown protein Lus10027224 [exp] 84 / 6e-21 AT3G02555 84 / 2e-20 unknown protein Lus10034327 [exp] 70 / 3e-15 AT1G68490 149 / 1e-46 unknown protein Lus10038934 [exp] 66 / 5e-14 AT1G68490 71 / 4e-16 unknown protein Lus10027557 [exp] 37 / 0.0006 AT1G68490 64 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099800 [exp] 188 / 2e-61 AT5G16110 135 / 7e-40 unknown protein Potri.017G114700 [exp] 184 / 7e-60 AT5G16110 139 / 4e-41 unknown protein Potri.015G047100 [exp] 139 / 3e-42 AT1G68490 116 / 4e-33 unknown protein Potri.010G124400 [exp] 135 / 1e-40 AT1G68490 151 / 7e-47 unknown protein Potri.008G121000 [exp] 130 / 1e-38 AT1G68490 150 / 3e-46 unknown protein Potri.012G056500 [exp] 119 / 1e-34 AT1G68490 119 / 2e-34 unknown protein Potri.005G108633 [exp] 44 / 6e-06 AT5G16110 50 / 6e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033560 pacid=23143288 polypeptide=Lus10033560 locus=Lus10033560.g ID=Lus10033560.BGIv1.0 annot-version=v1.0 ATGGGTCAGTTTTATCTTCAGCAGAACGTGGTTGCCTCTTGTGACGAAGCAAGATCATCTATGGTTTCCATCTCTGATCTCAGGGGTCCTGTTGTCTGCC CCAAGCCTCGCCGAGTTGGAATCCTAGCTAACAATTCCGTCCGCCCTTTAAGGTGGCAATTGAGTCATCAAGCGGATGGGATTGATAATGTAGGGGCTGA GCTTCTGGACCTTATCCTTAGGAAGGAGGATTATGATTCTGAGAAGTCTGCAACTCAGATGGCATCATCGCCTCCTTATTTCTGCGGGTCTCCTCCAGCC AGGGCTGCAAACCTTCTGATTCATGATGCTCTATTCAGGGATGAAAATGGGTTTCCCATGATGTCACCATCATCATTGTTTTCTCCATCTCCATCGGCGC GAAAGGGAGGCAGCAGCGCTGCAAGGATGAAGTACGGACTTAAGCCAGCTGCAGTTAGAGTAGAAGGGTTCGATTGCCTCAACAGGGATAGCCAGCATTC CAGGATCTCCGCGGTGGCTTAA
AA sequence Show only first row Show all	>Lus10033560 pacid=23143288 polypeptide=Lus10033560 locus=Lus10033560.g ID=Lus10033560.BGIv1.0 annot-version=v1.0 MGQFYLQQNVVASCDEARSSMVSISDLRGPVVCPKPRRVGILANNSVRPLRWQLSHQADGIDNVGAELLDLILRKEDYDSEKSATQMASSPPYFCGSPPA RAANLLIHDALFRDENGFPMMSPSSLFSPSPSARKGGSSAARMKYGLKPAAVRVEGFDCLNRDSQHSRISAVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16110			unknown protein		Lus10033560 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10037203 [exp]	10.3	0.8814
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	18.8	0.8672
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	21.4	0.8694
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	24.1	0.8763
AT5G16110			unknown protein		Lus10017599 [exp]	25.2	0.8729
AT4G37440			unknown protein		Lus10001409 [exp]	29.6	0.8611
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	37.3	0.8412
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	37.6	0.8651
AT5G47090			unknown protein		Lus10035047 [exp]	37.8	0.8589
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	41.4	0.8353

Compare expression of checked genes

Lus10033560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.