Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18400 121 / 6e-34 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) AT1G73830 118 / 9e-33 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2) AT1G25330 117 / 1e-32 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 105 / 1e-27 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G59640 103 / 4e-27 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT3G07340 104 / 3e-26 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 104 / 4e-26 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G10120 103 / 5e-26 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36540 101 / 5e-26 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT4G34530 101 / 9e-26 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017602 [exp] 244 / 2e-82 AT1G18400 122 / 7e-34 BR enhanced expression 1 (.1) Lus10009034 [exp] 121 / 5e-34 AT1G73830 186 / 2e-58 BR enhanced expression 3 (.1.2) Lus10009673 [exp] 120 / 9e-34 AT1G73830 204 / 1e-65 BR enhanced expression 3 (.1.2) Lus10038939 [exp] 119 / 1e-32 AT1G73830 193 / 9e-61 BR enhanced expression 3 (.1.2) Lus10017601 [exp] 115 / 1e-30 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006491 [exp] 107 / 1e-27 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026008 [exp] 105 / 4e-27 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10003172 [exp] 105 / 5e-27 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012484 [exp] 105 / 7e-27 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115300 [exp] 142 / 8e-42 AT1G25330 151 / 4e-45 HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G099400 [exp] 135 / 4e-39 AT1G18400 152 / 7e-45 BR enhanced expression 1 (.1) Potri.012G055700 [exp] 128 / 1e-36 AT1G73830 216 / 1e-69 BR enhanced expression 3 (.1.2) Potri.015G046300 [exp] 126 / 1e-35 AT1G18400 192 / 3e-60 BR enhanced expression 1 (.1) Potri.007G023600 [exp] 105 / 7e-27 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.012G104900 [exp] 104 / 1e-26 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G235400 [exp] 105 / 2e-26 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 105 / 2e-26 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G100101 [exp] 100 / 2e-26 AT5G48560 141 / 3e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G146500 [exp] 103 / 3e-26 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033562 pacid=23143437 polypeptide=Lus10033562 locus=Lus10033562.g ID=Lus10033562.BGIv1.0 annot-version=v1.0 ATGGCAGAGTTCAACACTCAACAATATTGGCACCAGAGACTTGGAACTTCTCATCATCACTTCCCAATCACACTGGACCAGTACTCTTTATTGCCTCAGC AGCAGCAATACTACCAACAAGGTTCTTCTGCATCTCTTGATGCTGATCAGCATATCGCTTCTTCTTCTTCATCTCCTCGTGCCAACGAAATATTGGGTTC AGTGAGGAGAAGTAGGAAGAAGAAGACATCGGGAAATGGCGAAGTTGTTCATGTTCGTGCGCGGAGAGGGCAAGCTACTGACAGCCACAGTGTTGCAGAG AGGGTGAGAAGAGAGAAAATCAACAACAAGTTGAGATGTTTGCAAGAGCTTGTTCCTGGATGCCACAAGTCAATGGGGATGGCAGTTATGCTAGAGGAGA TCATCAACTATGTATATTCTCTCCAGAATCAAGTTGAGGCGGCATACAACGTCATTGCTTACAGGCAGAAGCCACGGTTAAGGACTGCCTTAGAGATGCT GAGAACAACTCAAGAGATTGAACAACGGCTGGAAGAAGTATCAGTGCCGATGTTGATACTGCACGGGGATGCGGATATCGTGACGGACCCATTGGTGAGC AAGTTATTGTAA
AA sequence Show only first row Show all	>Lus10033562 pacid=23143437 polypeptide=Lus10033562 locus=Lus10033562.g ID=Lus10033562.BGIv1.0 annot-version=v1.0 MAEFNTQQYWHQRLGTSHHHFPITLDQYSLLPQQQQYYQQGSSASLDADQHIASSSSSPRANEILGSVRRSRKKKTSGNGEVVHVRARRGQATDSHSVAE RVRREKINNKLRCLQELVPGCHKSMGMAVMLEEIINYVYSLQNQVEAAYNVIAYRQKPRLRTALEMLRTTQEIEQRLEEVSVPMLILHGDADIVTDPLVS KLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	0	1
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	10.5	0.9972
AT3G09790		UBQ8	ubiquitin 8 (.1)		Lus10022258 [exp]	11.1	0.9911
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	11.2	0.9908
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	11.8	0.9871
					Lus10004351 [exp]	14.8	0.9972
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10023513 [exp]	16.9	0.9856
					Lus10003843 [exp]	18.2	0.9972
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	21.0	0.9972
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10013103 [exp]	23.0	0.9613
					Lus10022172 [exp]	23.5	0.9972

Compare expression of checked genes

Lus10033562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.