Plant FIBer expression Database

Lus10033563 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67070 534 / 0 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
AT3G02570 523 / 0 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017603
[exp]
731 / 0 AT3G02570 462 / 7e-162 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Lus10009165
[exp]
725 / 0 AT1G67070 540 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10028480
[exp]
720 / 0 AT1G67070 539 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Lus10015062
[exp]
571 / 0 AT1G67070 505 / 1e-178 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G115500
[exp]
631 / 0 AT3G02570 560 / 0.0 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1)
Potri.004G099100
[exp]
628 / 0 AT1G67070 573 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF01238 PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence
>Lus10033563 pacid=23143362 polypeptide=Lus10033563 locus=Lus10033563.g ID=Lus10033563.BGIv1.0 annot-version=v1.0
ATGGACTCTTCTGACCTGGTCAACAACCATCGCCTCCGCCGCCTGCGATGCTCGGTTCAACACTACGACTGGGGGATAATGGGGAAGGATGATTCTTTGG
TGGCGAGGCTGTGTGCTTTGAATTCCGGCTCGGAGACCCAACTTGACAAGCCTTACGCTGAGTTCTGGATGGGCATCCATGGCTCCGCTCCTTCTTTCGT
CGTGCTCGACAGTATCGGAACTATGGACAACAATGGCTCTGCCGCGTTGAGTTTGAAAGACTGGATTTTTCAGAATCCATGTGTGCTAGGCGACAAGGTT
TTGAATAAATGGGGTTCTGATCTTCCCTTCTTGTTCAAGATACTATCAGTGGGCAAAGCATTGTCGATTCAGGCACACCCGGATAAAGAATTGGCAAAGA
AGCTTCATAAGTTGCACCCAGATGTTTACAAGGATGAGAATCACAAGCCTGAGATGGCCTTGGCCATAACAGAGTTTGAAGCCCTTTGTGGCTTTGTCTC
TTTTGAGGAGCTGAAAGATGTCCTCTTTAATATTCCAGAGATTGCAGACTTGATAGACAGTAAAGACACAAATCAACTTATGGAAATCAATCATAAAGTT
GAAGGTGAAAAGGTTAAATCAATACTTAGATCCCTTTTTACCCAACTAATGTCAGCTAGCAAGGAGATGACTACCAAAGCGGTACGCAAGTTGAAAATCA
GATTGCAGATGCAGAGCCAGGTACAACAGTTGACTGATAAAGAAAATCTTGTGTTGAAATTGGAGAAACAATATCCAGATGACATTGGTGTAATATCAGC
CTTCTTTTTAAACCATGTGAAGCTTAAACCTGGTCAAGCTCTGTATCTTGGAGCAAATGAACCGCACGCTTATGTCTCCGGTGACTGCATTGAAGTAATG
GCTACCTCAGACAATGTTGTCCGTGCTGGTCTAACTCCCAAGCATAGGGATGTCCCGACTCTTTGCTCTATTCTCACCTACAAACAGGGCTTCCCTGAAA
TTCTGAAAGGGTTTCCTCTGAGTCCATACATAACAAGGTACCTTCCCCCGTTCGACGAATTTGAGGTGGATCATTGCTTCCTTCCGAAAGGGGAATCTAC
TGTGTTCCCGGCAGTGGAAGGGCCGTCTATATTTGTAGTCACGGGTGGGGAGGGAGCAATGCAGAAAGGTTCATCATCTTTGAGGGATGTAGTCATGGAA
GGAGATGTCATATTTGCACCTGCAGGTATCCAGATCGAGGTAAAGACTGGGTCTGAGTTGCATCTGTATAGAGCTGGAGTAAATAGTAGATTCCTCCAGA
CCCTTTGA
AA sequence
>Lus10033563 pacid=23143362 polypeptide=Lus10033563 locus=Lus10033563.g ID=Lus10033563.BGIv1.0 annot-version=v1.0
MDSSDLVNNHRLRRLRCSVQHYDWGIMGKDDSLVARLCALNSGSETQLDKPYAEFWMGIHGSAPSFVVLDSIGTMDNNGSAALSLKDWIFQNPCVLGDKV
LNKWGSDLPFLFKILSVGKALSIQAHPDKELAKKLHKLHPDVYKDENHKPEMALAITEFEALCGFVSFEELKDVLFNIPEIADLIDSKDTNQLMEINHKV
EGEKVKSILRSLFTQLMSASKEMTTKAVRKLKIRLQMQSQVQQLTDKENLVLKLEKQYPDDIGVISAFFLNHVKLKPGQALYLGANEPHAYVSGDCIEVM
ATSDNVVRAGLTPKHRDVPTLCSILTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDHCFLPKGESTVFPAVEGPSIFVVTGGEGAMQKGSSSLRDVVME
GDVIFAPAGIQIEVKTGSELHLYRAGVNSRFLQTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67070 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DA... Lus10033563
[exp]
0 1
AT3G04070 NAC ANAC047 NAC domain containing protein ... Lus10042531
[exp]
1.7 0.8590
AT1G76130 ATAMY2, AMY2 ARABIDOPSIS THALIANA ALPHA-AMY... Lus10021836
[exp]
4.0 0.8696
AT4G19840 AtPP2A-1, ATPP2... phloem protein 2-A1 (.1) Lus10018304
[exp]
5.8 0.8636
AT1G05510 Protein of unknown function (D... Lus10022586
[exp]
13.8 0.8436
AT3G20410 CPK9 calmodulin-domain protein kina... Lus10032640
[exp]
15.9 0.8304
AT1G02170 AtMCP1b, ATMC1,... LSD ONE LIKE 3, ARABIDOPSIS TH... Lus10010766
[exp]
18.3 0.8524
AT1G67540 unknown protein Lus10037003
[exp]
20.1 0.8064
AT5G14930 GENE101, SAG101 senescence-associated gene 101... Lus10032169
[exp]
20.6 0.8211
AT4G19840 AtPP2A-1, ATPP2... phloem protein 2-A1 (.1) Lus10040602
[exp]
22.4 0.7634
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Lus10036539
[exp]
25.0 0.8100

Lus10033563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.