Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 145 / 5e-42 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT1G13090 138 / 3e-39 CYP71B28 "cytochrome P450, family 71, subfamily B, polypeptide 28", cytochrome P450, family 71, subfamily B, polypeptide 28 (.1) AT3G26310 137 / 5e-39 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26300 137 / 6e-39 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26210 136 / 1e-38 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G25130 133 / 1e-37 CYP71B12 "cytochrome P450, family 71, subfamily B, polypeptide 12", cytochrome P450, family 71, subfamily B, polypeptide 12 (.1) AT1G13100 132 / 3e-37 CYP71B29 "cytochrome P450, family 71, subfamily B, polypeptide 29", cytochrome P450, family 71, subfamily B, polypeptide 29 (.1) AT3G26320 132 / 4e-37 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT1G13110 132 / 6e-37 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT5G25140 131 / 8e-37 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043362 [exp] 219 / 5e-70 AT3G26330 365 / 3e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10024518 [exp] 210 / 2e-66 AT3G26310 363 / 3e-120 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) Lus10002661 [exp] 152 / 1e-44 AT3G26300 323 / 2e-105 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10034230 [exp] 146 / 4e-42 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10029035 [exp] 144 / 2e-41 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016599 [exp] 142 / 8e-41 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10009903 [exp] 141 / 2e-40 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10016601 [exp] 138 / 3e-39 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10004907 [exp] 137 / 5e-39 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075000 [exp] 136 / 2e-38 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G085000 [exp] 136 / 2e-38 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G074900 [exp] 135 / 2e-38 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131001 [exp] 131 / 2e-38 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.015G028000 [exp] 135 / 4e-38 AT1G13080 326 / 3e-106 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.011G130850 [exp] 134 / 5e-38 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 134 / 7e-38 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 134 / 7e-38 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G184000 [exp] 134 / 9e-38 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Potri.007G084200 [exp] 132 / 2e-37 AT3G26300 385 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033564 pacid=23143359 polypeptide=Lus10033564 locus=Lus10033564.g ID=Lus10033564.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTACAGAAAGAGGTTGGAGATCAATTTGATGGAAAAGGAAGAATCGACTGTGCGGATCTCGATCAACTACAATATCTCAAATTAGTTATCA AGGAAACTTTCAGGATACATCCTCCTGCTCCTTTAATTGCTCCTAGAGAAGCTCGTGAGGCATCAGTAATTCATGGTTATCAGATACCTGCTAAAACCAG GATAATCATCAATGCATGGGCTATAGCTCGTGATCATCATAACGGGCGCGAACCCGAAAAATTTTATCCAGAAAGATTTCTTAATGGTCTCTCCTCCGGT AATACTGATTACTCCAAGGGATTGGATTTTTCATTGATCCCGTTTGGTTCCGGAAGAAGAATTTGTCCAGGGGTACAGTTCGGGATGGTTGTTGTGAGTC TGTCTTGCAAATTTGCTATATTATTTTGA
AA sequence Show only first row Show all	>Lus10033564 pacid=23143359 polypeptide=Lus10033564 locus=Lus10033564.g ID=Lus10033564.BGIv1.0 annot-version=v1.0 MEEVQKEVGDQFDGKGRIDCADLDQLQYLKLVIKETFRIHPPAPLIAPREAREASVIHGYQIPAKTRIIINAWAIARDHHNGREPEKFYPERFLNGLSSG NTDYSKGLDFSLIPFGSGRRICPGVQFGMVVVSLSCKFAILF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	0	1
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	1.7	0.9445
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	3.5	0.9314
					Lus10001343 [exp]	4.6	0.9189
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10000216 [exp]	5.3	0.7312
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	5.5	0.8834
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	6.0	0.8838
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	6.5	0.8630
AT1G50660			unknown protein		Lus10002072 [exp]	7.3	0.8794
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10043171 [exp]	7.7	0.8199
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031393 [exp]	8.4	0.7795

Compare expression of checked genes

Lus10033564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.