Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67040 142 / 9e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017607 [exp] 697 / 0 AT1G67040 179 / 7e-47 unknown protein Lus10037725 [exp] 64 / 6e-10 AT5G26910 276 / 4e-80 unknown protein Lus10016854 [exp] 62 / 1e-09 AT3G58650 134 / 2e-33 unknown protein Lus10029857 [exp] 53 / 1e-06 AT3G58650 345 / 2e-105 unknown protein Lus10020689 [exp] 52 / 2e-06 AT5G26910 350 / 2e-107 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098300 [exp] 402 / 8e-126 AT1G67040 339 / 2e-102 unknown protein Potri.017G116000 [exp] 237 / 1e-65 AT1G67040 317 / 3e-94 unknown protein Potri.013G010500 [exp] 70 / 4e-12 AT5G26910 371 / 6e-115 unknown protein Potri.010G140900 [exp] 66 / 9e-11 AT3G58650 235 / 4e-65 unknown protein Potri.T171201 [exp] 66 / 1e-10 AT3G58650 235 / 3e-65 unknown protein Potri.008G108600 [exp] 65 / 2e-10 AT3G58650 234 / 6e-65 unknown protein Potri.005G019700 [exp] 65 / 2e-10 AT5G26910 417 / 4e-132 unknown protein Potri.005G176051 [exp] 44 / 1e-05 AT1G67040 67 / 1e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033565 pacid=23143391 polypeptide=Lus10033565 locus=Lus10033565.g ID=Lus10033565.BGIv1.0 annot-version=v1.0 ATGGACGAGACTTCCTCCACCGTCAGCTGCCTCGCCGTCGCCGACAACAACCACCGCCCTCAAAAACCGGGTGGCTGCGTCGGCATTTTCTTCCACCTCT TTGACTGGAACCGCCGTTTCGCCAAGAGGAAGAAGCTCTTCTCCTCTTCCAAGAAACTCCTCCCTCCTCCCAGAACAGAGCATCCTCCCTCCATTAAGTT CGCCGCCGATGATAAAATGCCCAAATCCAACACTCATATTTCGGTTGACCCAAAGAAGAGCTGTAACAGAAATTGCACGGAGATTCAGAAGAAGCAAGAA ATGCGGCCACCTAGTTTGGTTGCTAAGCTGATGGGGTTGGACTCAATGCCAGCGAAGAAGTCTTCTAATCCAGCTGATCCTTCTGGCATGGAAAAGGCAA GCGCAAAGGTTGAATCATCCAGGCCACAGAAGCTTCAAAAGACTGGTGGGGTTGGAGCTGAGGCTTTACAGATTAGGAATGTTCTTCAGTCGGCTAGGAA GCAACATAACCACAGTACTAGAAAACTTGCTAACCCAGTTAAGAGTCCTAAGTTTTTAACATCATCTACAAGGCATGCATCCACCAGGACCTCTAAGTTG ATTGATGCAGCTACTAGGATTTTGGAGCCTGGTTTACAGGCTACTCAGAGAGCCAAATCCACCATTTCTTATTCTAATTCGATGCGTTTCAATGACTCTA GTAGAAGTAGCTTCCCGCAAGAACATCATCAGGAGAGTAGTAATGTAGTGACTTCCTGCAACAACTGTGGGAATTTGGTTGACGTGGTAGTAGAATCAAG GCTTAATTCGCTGGCTTCTCATTTCGGCAACTCGAGCCATGGAATGACATACTCCAACCAAGGGAGGGATCCTCCAGCTGCCTGCAAGAGGAAACAAGGC AGTGAGGCAGACATGGAGGAGAAAGCAAGAGCCTTTAGTGATGTAGTCACTGAAGTTGGTGTAGTAGATAGGCAGGCAATGCCAATGCCACGCGAGTTTC GAGCTCAGGGAGGGGTGTCTCGATTTCGACAAGGAGGCAGTCAACCAAGGGAAAAGACATCATCTCCTTCTGCTGGATTTAAGCAGAGAAGCCCCCAAGC TACTAATAAAACAATGTCGATAGGCAATGATGATGGTTTAATACCAAGGTCCAATTTCGTAAGTAACATAGAAAGTAGTAGCAGGAGGACCAAGGATTTC ATTGCTATGAACCGAAGTTTGACTAGCCGGTCGCCTAGGCCTCGTGTATCTAACAACATGGAGAGGAAGTTCATCAACAGAAGAGACGATGGTTTGCCTC CGTTAAGGTGTAAGAGGAGGATCGGTAGTAGTGACTTCAATGCACAACTCGAAAGCTCTCGACTTGGCAATTCGACAGTGCCTGTAAGACAAAGGAACAT CAATGTCGATGCTGTTAGTTCAAGATCAGGTGTTCAAGGTGGTGGTGGCAACATTGGAGGTGGTACTGCATCTTTTACGTTCAGTTCCCCATCGACATCG ACGCATAAAACTGGACGATTGGATGATCATCGCAGGAACCAACGATCAGTGGAAAAGCAAGAGTTGCCGAGAAAAGATGCCCTAGGCGCCCTTATCCAAG AGAAGTTGAAGGAATTGATCTGCCAAGAGGAAAATGAAGGTGGACATCCCACAAGATCTACTGCTAGCATTCTCCAGGAGTTGATATCTGCGTTGACAAT AGAGCAGCTTACTTCTCCACATTCTAATAATTTTCCTACTCTCACACCACCTTTCCAGAAAGGAAGGAAGTTAATACATGACAGTGATCATCTGAGTCCT GGATCGGTTCTTGACGCTAGCTTCTCAACTGAAAGCTGCCTCTCTAGCAGTCTAGATGACATCTCAGTGTGCAGGTTGCTTCCGGACTTTGTCGATACCT TGCATGATATCGATGAAGGAAGGATTTTTCCCAAGCTTGTGACTAACATGCTGGACCATATCTCCAGAATACTACAGAGCATTAGTCTAGCTGGTGGCTG CTGCCAATGGACAAGCAGAGACCTTGGCCATGCAAAAGAAACCATCTTGACAGCTGAACTTTTATTCGGACGTCATAGTGCAGATCGAGCCAGAAGTTCG GTATTGGGACATATCCTTCTCGACGAGCTCAATGGTCTATCGATTCACATCTGGCCGGAAGGTAGCAACTTCATTTCTGGTTTGGAAGGGAGTAGAAAAG AGGGTAATAACCAACTCAGGAGGCTTCTGTTCGACTGTGTAATCGAATGGTTAGACTCGAGATGCAGAAAATACTGCGATTCGGGCCACAGAACATGGAG ACAGTTCCTCCCCCCTCAGGAATGGTGCACCCAGCTGGTTATCGAAGAGGTTGGAGCAGAGATGAAGAGGTGGACGAACATGGCGAGGATGATACCGGAC GAAATGGTAGAGGTGGAGATTGGTCAGTCCGTGGGGAAATGGACCGAGTTCAAGATGGAATCGTGCGAAATCGGTCGGGACATTGTTGAGGCTTTGTTGG AGGAAACTGTGAGAGAACTTTGGCTATAG
AA sequence Show only first row Show all	>Lus10033565 pacid=23143391 polypeptide=Lus10033565 locus=Lus10033565.g ID=Lus10033565.BGIv1.0 annot-version=v1.0 MDETSSTVSCLAVADNNHRPQKPGGCVGIFFHLFDWNRRFAKRKKLFSSSKKLLPPPRTEHPPSIKFAADDKMPKSNTHISVDPKKSCNRNCTEIQKKQE MRPPSLVAKLMGLDSMPAKKSSNPADPSGMEKASAKVESSRPQKLQKTGGVGAEALQIRNVLQSARKQHNHSTRKLANPVKSPKFLTSSTRHASTRTSKL IDAATRILEPGLQATQRAKSTISYSNSMRFNDSSRSSFPQEHHQESSNVVTSCNNCGNLVDVVVESRLNSLASHFGNSSHGMTYSNQGRDPPAACKRKQG SEADMEEKARAFSDVVTEVGVVDRQAMPMPREFRAQGGVSRFRQGGSQPREKTSSPSAGFKQRSPQATNKTMSIGNDDGLIPRSNFVSNIESSSRRTKDF IAMNRSLTSRSPRPRVSNNMERKFINRRDDGLPPLRCKRRIGSSDFNAQLESSRLGNSTVPVRQRNINVDAVSSRSGVQGGGGNIGGGTASFTFSSPSTS THKTGRLDDHRRNQRSVEKQELPRKDALGALIQEKLKELICQEENEGGHPTRSTASILQELISALTIEQLTSPHSNNFPTLTPPFQKGRKLIHDSDHLSP GSVLDASFSTESCLSSSLDDISVCRLLPDFVDTLHDIDEGRIFPKLVTNMLDHISRILQSISLAGGCCQWTSRDLGHAKETILTAELLFGRHSADRARSS VLGHILLDELNGLSIHIWPEGSNFISGLEGSRKEGNNQLRRLLFDCVIEWLDSRCRKYCDSGHRTWRQFLPPQEWCTQLVIEEVGAEMKRWTNMARMIPD EMVEVEIGQSVGKWTEFKMESCEIGRDIVEALLEETVRELWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67040			unknown protein		Lus10033565 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	2.0	0.9607
AT1G67040			unknown protein		Lus10017607 [exp]	3.0	0.9542
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	3.2	0.9525
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10036769 [exp]	3.5	0.9537
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	3.7	0.9591
AT2G45340			Leucine-rich repeat protein ki...		Lus10004032 [exp]	3.7	0.9442
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10013125 [exp]	4.2	0.9524
AT4G39790			Protein of unknown function (D...		Lus10041710 [exp]	4.6	0.9512
AT5G51560			Leucine-rich repeat protein ki...		Lus10031123 [exp]	5.5	0.9463
AT5G16850		ATTERT	telomerase reverse transcripta...		Lus10026080 [exp]	8.1	0.9231

Compare expression of checked genes

Lus10033565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.