Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67030 94 / 6e-24 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT1G68360 89 / 2e-21 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 62 / 1e-11 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 62 / 1e-11 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT2G41940 61 / 3e-11 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT1G24625 60 / 6e-11 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G06650 58 / 2e-10 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G25160 58 / 3e-10 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 58 / 4e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G10480 57 / 6e-10 C2H2ZnF ZFP5 zinc finger protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017609 [exp] 231 / 2e-77 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10029204 [exp] 66 / 8e-13 AT1G68360 71 / 2e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021081 [exp] 64 / 2e-12 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017229 [exp] 62 / 4e-12 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 62 / 8e-12 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10018328 [exp] 59 / 9e-11 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10030764 [exp] 59 / 3e-10 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10013243 [exp] 59 / 3e-10 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10017125 [exp] 58 / 3e-10 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097900 [exp] 105 / 3e-28 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.017G116300 [exp] 100 / 1e-25 AT1G68360 99 / 6e-25 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.010G122400 [exp] 95 / 9e-24 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 91 / 4e-22 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G195100 [exp] 70 / 2e-14 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 70 / 2e-14 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.002G199200 [exp] 67 / 1e-13 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.010G140700 [exp] 64 / 1e-12 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 62 / 2e-11 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G180600 [exp] 62 / 2e-11 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033567 pacid=23143508 polypeptide=Lus10033567 locus=Lus10033567.g ID=Lus10033567.BGIv1.0 annot-version=v1.0 ATGGCTGACGACCCTGCTAATGATAAGGACTTCGGCAACGCCACCACAGGCTGTCTCAAGCTCTTTGGCTTCGACATTTCTGAAACGACATCATCACCAC CACCATCATCCACCCCGGCTGATTTCGTGGCGGCCGAACCCCGAAGGTACGAGTGCCAGTACTGCTGCAGAGAGTTCGGCAATTCCCAAGCCCTGGGAGG CCATCAGAACGCTCACAAGAGGGAAAGACAGCTCCTCAAGCGCGCCCAACTTCAAGCCACTCGCAACTTCGCCGCCGCCGCCGCCGCCGCCGCTTCGTAC TCTGCAGCCAACTCCATGTTCTCCGGCGCGGTTGTGCCGCAGCCACACCACCAACTCATCGCGTCGGCGCCGCCTAATTCGTGGTTGTTTTACGCGGAGC ATTTGGCGGCGGCGAGTGGTGGGACACGGATCCAGCCACGATTTGCAAGGCGTGGAGTTGGGGAGAGGGTTATTGTAGGGTCCGGTGACGAGGAGGAGGT TGATATTAATGACTACGTCGGGAGGTCGCGGCCGGAATCCGAGAGTGATGAAGTTGGGCTGGGTCATTGTGAGAACGGAATGGGCTTGGACTTGCGTTTA GGGATGGGCCGGATGTGTCGTGATGTTGTGGAATAG
AA sequence Show only first row Show all	>Lus10033567 pacid=23143508 polypeptide=Lus10033567 locus=Lus10033567.g ID=Lus10033567.BGIv1.0 annot-version=v1.0 MADDPANDKDFGNATTGCLKLFGFDISETTSSPPPSSTPADFVAAEPRRYECQYCCREFGNSQALGGHQNAHKRERQLLKRAQLQATRNFAAAAAAAASY SAANSMFSGAVVPQPHHQLIASAPPNSWLFYAEHLAAASGGTRIQPRFARRGVGERVIVGSGDEEEVDINDYVGRSRPESESDEVGLGHCENGMGLDLRL GMGRMCRDVVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10033567 [exp]	0	1
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10006547 [exp]	4.1	0.8223
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10010912 [exp]	7.4	0.8473
					Lus10033359 [exp]	8.4	0.8612
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	12.5	0.8550
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10017818 [exp]	14.9	0.8483
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	20.4	0.8476
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	22.0	0.7691
					Lus10003550 [exp]	23.5	0.8426
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	25.3	0.8426
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	27.0	0.8421

Compare expression of checked genes

Lus10033567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.