Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16150 629 / 0 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 304 / 2e-96 Major facilitator superfamily protein (.1) AT1G67300 285 / 9e-90 Major facilitator superfamily protein (.1.2) AT1G79820 270 / 6e-84 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G43330 169 / 7e-46 ATINT1 inositol transporter 1 (.1) AT2G20780 157 / 9e-42 AtPLT4 Major facilitator superfamily protein (.1) AT2G16130 155 / 3e-41 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT3G18830 154 / 2e-40 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT3G05150 153 / 2e-40 Major facilitator superfamily protein (.1) AT1G19450 150 / 2e-39 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017610 [exp] 876 / 0 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10009158 [exp] 758 / 0 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 753 / 0 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 275 / 3e-85 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 270 / 1e-83 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10034930 [exp] 253 / 8e-77 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10018581 [exp] 172 / 9e-47 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 171 / 3e-46 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10031637 [exp] 170 / 5e-46 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097800 [exp] 644 / 0 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 477 / 1e-166 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 300 / 6e-95 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 288 / 5e-91 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 273 / 3e-85 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G032200 [exp] 169 / 5e-46 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.013G135200 [exp] 169 / 5e-46 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 163 / 1e-43 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.004G151725 [exp] 161 / 3e-43 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 160 / 1e-42 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10033568 pacid=23143523 polypeptide=Lus10033568 locus=Lus10033568.g ID=Lus10033568.BGIv1.0 annot-version=v1.0 ATGCCGTCAGCAGCGACGTTTGCCGTGAAAGCTAGATTGGGCGGGGTTTGTGGTTTGGACGCCGGATTAGGATTACATCATGAGCTCGGGTGGAAGAAGC GGCAGAGCGTTGGTTTCATCGCCGGTTCTGCCGATTTCCGCCGCTGTGGGAGGTTGGCGAATTGGGTATCGTTGAAAGCAAATAGCAGCGTAACTTCTTA CTCCGGATTGCGTAATGATTCTGTCCCGAAGATGGTGACCGAGCTTGTACGCCCAAGCTTCTTCAGGAACCGACCAGTCAGAGCTCTATCTTCCGATGGT GATATTGAAGATGTGGCTCCGTTAAGAGATCTGAATCTCTCGGTGCCAAAAGGAACGTCTAGTGGAACGGTTCTGCCATTTGTAGCTGTTGCTTGTCTGG GAGCTACTCTGTTTGGTTATCATCTGGGAGTGGTGAATGGTGCTCTTGAGTACCTAGCCAAGGATCTTGGGATTGCTGAGAACACCGTCTTACAAGGGTG GATTGTTAGTACACTACTTGCTGGTGCCACTCTTGGTACATTTACCGGAGGTGCATTGGCTGACAAATTTGGCAGAACAAAGACATTTCAGTTAGATGCA ATCCCACTAACAATTGGAGCAATTCTTTGTGCCACTGCCCAGAATGTACAGACCATGATAATCGGCCGTTTTCTTGCTGGTATTGGAATTGGCATCTCTT CTGCTATTGTGCCACTTTACATATCTGAGATCTCACCCACTGAAATCCGAGGCGCACTGGGTTCTATAAACCAACTTTTCATATGCATTGGGATTCTTTT GGCGCTGGTGGCAGGATTACCTTTAGCTGGAAACCCCTTATGGTGGCGAACAATGTTTGGCATTTCTGCTGTGCCTTCAATTTTGTTAGCACTTGGAATG GCATTTTCTCCCGAAAGCCCTAGATGGCTGGTTCAGCAAGGGAAACTCTCTGAAGCGGAGAAGGCCATACAGACACTTTATGGAAAAGAAAGAGTGCCTG CAGTCATGCAAGATTTGAGAGCATCTGGTCAAGGTTCATCAGAGCCTGAGGCAGGATGGCTTGATCTATTTAGTAGCCGTTACTGGAAAGGCATGTGTTT AATTGTAAGTGTGGGGGTAGCACTTTTCTTCTTCCAACAGATGGCTGGCATAAATGCTGTAGTCTACTATTCGACTGCTGTGTTTCGAAGTGTTGGAATA GGATCTGATGTTGCAGCAAGTGCCCTTGTTGGAGCCTCAAATGTTCTCGGCACAACCATTGCCTCATCTTTGATGGACAAACAAGGAAGGAAAAGCCTGT TGGTCATAAGCTTCTTAGGAATGGCTGCGTCAATGTTACTGCTTTCCTTGTCTCTAACTTGGAAGGTGCTGGCACCATATTCCCGCACGCTTGCTGTTCT TGGGACAGTTTGCTATGTCCTGTCTTTTTCACTTGGGGCCGGTCCTGTACCTGCTCTTCTACTGCCGGAGATATTTGCATCAAGAATTAGAGCCAAAGCC GTTTCACTGTCATTAGGAATGCACTGGGTTGCGAACTTTGTGATCGGCCTTTATTTCTTGAGCACGGTAAACAAGTATGGGATCAGCAAGGTGTACTTGG GATTTTCAGGCGTCTGTCTTTTGGCTGTTGTATACATACTTAACAATGTCGTCGAAACGAAAGGAAGATCACTGGAGGAGATTGAACGTGTCCTAACCAC CACACCGTGA
AA sequence Show only first row Show all	>Lus10033568 pacid=23143523 polypeptide=Lus10033568 locus=Lus10033568.g ID=Lus10033568.BGIv1.0 annot-version=v1.0 MPSAATFAVKARLGGVCGLDAGLGLHHELGWKKRQSVGFIAGSADFRRCGRLANWVSLKANSSVTSYSGLRNDSVPKMVTELVRPSFFRNRPVRALSSDG DIEDVAPLRDLNLSVPKGTSSGTVLPFVAVACLGATLFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSTLLAGATLGTFTGGALADKFGRTKTFQLDA IPLTIGAILCATAQNVQTMIIGRFLAGIGIGISSAIVPLYISEISPTEIRGALGSINQLFICIGILLALVAGLPLAGNPLWWRTMFGISAVPSILLALGM AFSPESPRWLVQQGKLSEAEKAIQTLYGKERVPAVMQDLRASGQGSSEPEAGWLDLFSSRYWKGMCLIVSVGVALFFFQQMAGINAVVYYSTAVFRSVGI GSDVAASALVGASNVLGTTIASSLMDKQGRKSLLVISFLGMAASMLLLSLSLTWKVLAPYSRTLAVLGTVCYVLSFSLGAGPVPALLLPEIFASRIRAKA VSLSLGMHWVANFVIGLYFLSTVNKYGISKVYLGFSGVCLLAVVYILNNVVETKGRSLEEIERVLTTTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10033568 [exp]	0	1
AT2G32760			unknown protein		Lus10016662 [exp]	5.9	0.9090
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	8.2	0.9024
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	18.4	0.8961
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Lus10012273 [exp]	19.2	0.8944
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10034921 [exp]	19.9	0.8757
AT5G08430			SWIB/MDM2 domain;Plus-3;GYF (....		Lus10020897 [exp]	19.9	0.8859
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	20.2	0.9003
AT1G79790		AtcpFHy1	flavin mononucleotide hydrolas...		Lus10009551 [exp]	20.8	0.8766
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	22.0	0.8946
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10032065 [exp]	23.7	0.8685

Compare expression of checked genes

Lus10033568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.