Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01210 598 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 581 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 550 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 422 / 3e-138 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 323 / 8e-101 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 317 / 9e-99 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 300 / 1e-90 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 251 / 2e-73 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G33170 243 / 4e-68 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 233 / 7e-65 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017611 [exp] 1207 / 0 AT1G66830 672 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 537 / 0 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 522 / 4e-177 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 397 / 4e-128 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 270 / 7e-80 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 263 / 2e-78 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 246 / 2e-71 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 221 / 3e-63 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011761 [exp] 226 / 9e-63 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095700 [exp] 730 / 0 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 699 / 0 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 627 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 603 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 436 / 3e-142 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 431 / 2e-141 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 322 / 1e-100 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 316 / 4e-98 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 252 / 5e-74 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G142300 [exp] 250 / 3e-72 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033569 pacid=23143282 polypeptide=Lus10033569 locus=Lus10033569.g ID=Lus10033569.BGIv1.0 annot-version=v1.0 ATGGCACTCTTCCATCTATACTTCACATATCTCTTCATCATTCTCTCCCATTCCTTCTCACTCTCACACTCCTTAAACAACGAAGGAATTGCTCTTCTCT CCTTCAAGCAATCCCTGATCAACATTTCTGCAGACTCCCATTTGCTCAACTGGAATCCTTCTGACGATAACCCTTGCTCCTGGGAAGGAATCGCCTGCAA ACGTGGACGAGTCACCTCGCTCATCCTTCCTTACAAGCAACTCACTGGCGTCTTCCATCTCGACGCCACGAATCTCACCCAGCTCCGCCACCTCAATCTC AGAAACAACAATTTATCCGGAAGCTTTCCGCCCGAATTCTTCAGAGCAGCTTCAGGGCTGAAAACTCTCGTTGTATCAGGAAATTCCTTCTCGGGTCCTA TTCCTGAAGAGATTGGTAACCTTAAATCCCTGCAAAGCCTCGATCTTTCTCGTAATTCGTTCAATGGGTCGTTCCCTCTGTCTCTGGTGAACTGCAACAG ATTGACGCAGCTAATCCTTAGCTCCAACGGATTCTCTGGTTCCATACCTGATGGGATTGGGGTTAATTTGGTTGGGCTTGAAACTCTCAATTTATCATTC AATGCCTTCAATGGGGAAATCCCTGCTGACTTGGGAAACTTGTCCAGCTTGGAAGGAGCACTGGATCTGTCTCATAATTCCTTCAGCGGTCCGATTCCGA CGAGTCTCGGAGCTCTCCCAGAGACCGTCTACATCAATCTCAGTTACAACAATCTGAGCGGTCCGGTTCCACAGACTCAGACCCTGCTTGATGCAGGGCC CACAGCTTTCGTCAGCAATCCGTTCATCTGCGGGCTGCCAACGAGAACTCCGTGCAGCCTATCATTGCCGGAGAAGCCTAAACCAACGGCGGATGATAAT TCATCCCTGGAACCGGCAAAACACGAATTACTACGTAATCCGTGTCTTGTCCTTGTTGCAACTGTCTTAGGGACATTGCTGGGGATCAGCTTAGTTGCAC TGTCTTTCGTGTACTGGTACAAAAAAGCTCATCCCGGTAAGAAACCGGGCAAGAAGATCGTTGACGAGAGATCGGTGATCGGGAAAGATATGTTCTGTTT CAGGACAGATGATCTGGAGTCGTTGTCCGGGAACATCGATCAGTACGCTTTCTTGGCGATGGAGACCGCGTTGGGTTTCGATCTGGAGCAGCTCCTGAAA GCTTCAGCGTTTCTGCTCGGAACGAGCGGTGTCGGACTAATGTACAAAGTTGTGATAGAAAATGGGATAACTTTAGCCGTTAGGAGGCTGGAAGATGGAG GGTCTCAGAGGTTTAAGGAATTCCAGGGAGAAGTGGAAGCCATTGGCAAAATCCGGCACCGTAACATCGTCAGACTTCTCGCCTGCTGCTGGTGTCTCAG CGAGAAGCTTCTCATCTACGAATTCGTCCCCAACGGGAACTTAGCAACTGCAATTCATGGAAGAAATGGTGTGGCGAATCTGAAGCCAATGTCATGGTCG GTTCGGCTCAGGATTCTTCGAGGCATTGCTAGAGGTTTGGTGTATCTCCACGAATGCAATCCCAAGAGGTATGTCCATGGCCATCTGAAGCCAACCAGCA TACTCCTTGGAGAGGCAATGGAGCCGCAAATAGCCGATTTTGGACTCAATCGCCTAGCCAGCACAACAGCTGAAGATTCCATGGAATCGCAGCCGGAGAG CAGGACGCCTTCTCAGTGTTCCCCGTACGCTTTAACACCAGTAAGCTTCAGAAGCAGCAAAGGATGGTTCGAGTACGAAGCTCCTGAGGTAGCTGCGAGA CCAGCTTCGACAAAGCCATCGCAGAAATGGGATGTCTACTCCTACGGAGTTATCCTACTAGAGACAGTCACCGGAAAATCGCCGATGATCATGCGTGCCA CCAGCGGTTCCGAAATGGATTTGGCCAGATGGGTCCAGCTCAGCCTCGAAGTTAGTAAACCAGTTGCTGATATAGCAGATCCCTACTTGGCGCGGGATCC CGACAAGGAAGACCAGATGGCTGCTGCGCTTAAGATCGGTCTAGCCTGTGTCAATGCGAGCCCCGAAAAGAGGCCTTCCATCAGAAATGTCAGCATTGCC TTGGACAAATTGGCTGCTGTATAG
AA sequence Show only first row Show all	>Lus10033569 pacid=23143282 polypeptide=Lus10033569 locus=Lus10033569.g ID=Lus10033569.BGIv1.0 annot-version=v1.0 MALFHLYFTYLFIILSHSFSLSHSLNNEGIALLSFKQSLINISADSHLLNWNPSDDNPCSWEGIACKRGRVTSLILPYKQLTGVFHLDATNLTQLRHLNL RNNNLSGSFPPEFFRAASGLKTLVVSGNSFSGPIPEEIGNLKSLQSLDLSRNSFNGSFPLSLVNCNRLTQLILSSNGFSGSIPDGIGVNLVGLETLNLSF NAFNGEIPADLGNLSSLEGALDLSHNSFSGPIPTSLGALPETVYINLSYNNLSGPVPQTQTLLDAGPTAFVSNPFICGLPTRTPCSLSLPEKPKPTADDN SSLEPAKHELLRNPCLVLVATVLGTLLGISLVALSFVYWYKKAHPGKKPGKKIVDERSVIGKDMFCFRTDDLESLSGNIDQYAFLAMETALGFDLEQLLK ASAFLLGTSGVGLMYKVVIENGITLAVRRLEDGGSQRFKEFQGEVEAIGKIRHRNIVRLLACCWCLSEKLLIYEFVPNGNLATAIHGRNGVANLKPMSWS VRLRILRGIARGLVYLHECNPKRYVHGHLKPTSILLGEAMEPQIADFGLNRLASTTAEDSMESQPESRTPSQCSPYALTPVSFRSSKGWFEYEAPEVAAR PASTKPSQKWDVYSYGVILLETVTGKSPMIMRATSGSEMDLARWVQLSLEVSKPVADIADPYLARDPDKEDQMAAALKIGLACVNASPEKRPSIRNVSIA LDKLAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66830			Leucine-rich repeat protein ki...		Lus10033569 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	2.8	0.8687
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10018731 [exp]	3.5	0.8600
AT2G40820			unknown protein		Lus10027293 [exp]	5.7	0.8523
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	6.0	0.8031
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	6.5	0.8227
					Lus10020368 [exp]	8.2	0.8446
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041013 [exp]	12.8	0.7585
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	13.2	0.8433
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	14.1	0.8133
AT5G62550			unknown protein		Lus10024245 [exp]	14.8	0.8107

Compare expression of checked genes

Lus10033569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.