Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16220 150 / 8e-40 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 114 / 2e-26 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 109 / 4e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 87 / 6e-19 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 89 / 7e-19 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 87 / 5e-18 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 85 / 2e-17 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 79 / 6e-16 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G04700 77 / 2e-14 PB1 domain-containing protein tyrosine kinase (.1) AT3G26510 72 / 2e-14 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017612 [exp] 754 / 0 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 112 / 9e-27 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 113 / 2e-26 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 110 / 2e-26 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 108 / 3e-25 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 99 / 1e-21 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 98 / 1e-21 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 97 / 2e-21 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 91 / 1e-20 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095600 [exp] 292 / 1e-92 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.017G119100 [exp] 278 / 2e-87 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 121 / 3e-29 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 117 / 1e-27 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 115 / 6e-27 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 98 / 8e-22 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 97 / 1e-21 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 86 / 1e-17 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 84 / 3e-17 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 81 / 6e-16 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10033570 pacid=23143313 polypeptide=Lus10033570 locus=Lus10033570.g ID=Lus10033570.BGIv1.0 annot-version=v1.0 ATGATGGAGCCTCCCACCGGGGCTTCTAAACTCCGACTCATGTGCAGTTACGGCGGCAACATAATCCCCCGCCCTCAGACCAAATCCCTCTTCTACGCCG GTGGCGACACTCGCATCATCACCGTCCCTAACATCGCCGCCGCCAATCTCACTCTCAATTTCCTCGCCGCTCAATTGGCCGCCGCTCTACGCCTCTCGAC GCCGTTCAACCTCAAGTACCAGCTCCCTTACCATGACCTTGACTCTCTCATCACTCTCTCTAACGACGAGGATGTCGCCATCATGATTGACGAATACAGC CGCGCTTTCCCGTCCCCTGCTCGGATTAGATTGTTCGTCTTCCCAGCCAAACAGCCTCTCAAGTCTGCTTCTAAATCGGTGGAGCTAGGGATCAGCGAGT TTACTCATCCGAAGAAGGAGAGTTGGTTCGTCGATGTGCTGGAGAGCGCCAAGATTATGCAGAGAGGGGGAGCGGTAGGGTTTGTCGGGGAAGGCCACGG AGAGGGAAATAACAGTGGCGGTGATACCGTTCTTGGACGTTGTGGAGCTGAGTCGATTGTTCTTGAGACTAGCTTGTCGTTTGGATCGACTTCGTCTTCG GGCTCCTCCTCTAATTCGCCTGCCAAATGCCAGATCGAGGATGCTGGAGCTGGTTTACAGGATAACAAAGTGAAATTATCTGCTCCAGAATCAATTCCCA GTGATAAAGGCTTAGGAGCTGCAATTTCTCAGCATAACCAGGATTCGATTGGTTGTATTACCACAATGGAGGGTAAAGTTGCAAGTAATCCAATGGAGCC AGAGATGAAAACATCTGATGTTACTGCTGAGGCAAAGATGACCGGATCAGCTCCGATATCCATGGTTCCTTCGCAGTTTCAATATGAACAGCCACATCAA GTTCAGTATATCCATGCCCCTACTGGCTTACAGTATGTGAACTCCAATCAAGCTGGTGTAATGCAGATGCCTTCCTATTACATGATCAATCCTCCAATGA CTCAGCAGCCGGTCTATTACCAGGCCAACCAACCGCAACCATTTTACTTCGTACAGGTACCGCCACAGACATGTAACATGCCTATGCAGCAGAGTGGTCT GGTTAGCTCTTCAACAGTTCCATCGAGTAGACCACCCTTGCATCCAAACTCCTCTCTGAACCCTGCACAAGTGAGTTACAAGGTTGCAGCCATTCCATCG CAGCCTGAGTTATCTTCTCAAGCCTATACCAGAGCCACTCTGGCAAATCCACTTGCTAATGTACCTCCAACCAGTAGCCATCTGCAAATGAATCTTCAAG CTCAGCCTGCTGCTATTGCTCCGGTGGAGGAGTTGAACTACATTAACGAAGATGATCATGATGCAACTCATGGTCAGATATACAAATCTCAGCCTCCTCC TCCAGCACTGTCATCTCAGTACCAAACCGTGACCAAAGCTCCAACAACTTTGTTAGCAGATGCCCTGGCCCAGTTGCATACAGATGGTAACCTCAAGCCT CAGGTCGTAACCTCACAGCAACAATGA
AA sequence Show only first row Show all	>Lus10033570 pacid=23143313 polypeptide=Lus10033570 locus=Lus10033570.g ID=Lus10033570.BGIv1.0 annot-version=v1.0 MMEPPTGASKLRLMCSYGGNIIPRPQTKSLFYAGGDTRIITVPNIAAANLTLNFLAAQLAAALRLSTPFNLKYQLPYHDLDSLITLSNDEDVAIMIDEYS RAFPSPARIRLFVFPAKQPLKSASKSVELGISEFTHPKKESWFVDVLESAKIMQRGGAVGFVGEGHGEGNNSGGDTVLGRCGAESIVLETSLSFGSTSSS GSSSNSPAKCQIEDAGAGLQDNKVKLSAPESIPSDKGLGAAISQHNQDSIGCITTMEGKVASNPMEPEMKTSDVTAEAKMTGSAPISMVPSQFQYEQPHQ VQYIHAPTGLQYVNSNQAGVMQMPSYYMINPPMTQQPVYYQANQPQPFYFVQVPPQTCNMPMQQSGLVSSSTVPSSRPPLHPNSSLNPAQVSYKVAAIPS QPELSSQAYTRATLANPLANVPPTSSHLQMNLQAQPAAIAPVEELNYINEDDHDATHGQIYKSQPPPPALSSQYQTVTKAPTTLLADALAQLHTDGNLKP QVVTSQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	0	1
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10017612 [exp]	1.0	0.9413
AT1G72430			SAUR-like auxin-responsive pro...		Lus10037443 [exp]	10.4	0.7473
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	13.1	0.8007
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	13.2	0.8142
AT2G38610			RNA-binding KH domain-containi...		Lus10021676 [exp]	15.2	0.7605
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	16.2	0.7945
AT1G62730			Terpenoid synthases superfamil...		Lus10032248 [exp]	16.6	0.7686
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	17.9	0.7845
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10013467 [exp]	24.0	0.7638
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	31.7	0.7387

Compare expression of checked genes

Lus10033570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.