Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47485 43 / 8e-06 unknown protein AT3G62650 42 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017613 [exp] 256 / 3e-89 AT3G62650 47 / 2e-07 unknown protein Lus10009157 [exp] 175 / 3e-57 AT2G47485 57 / 6e-11 unknown protein Lus10028487 [exp] 172 / 4e-56 AT2G47485 52 / 4e-09 unknown protein Lus10009156 [exp] 167 / 2e-54 AT2G47485 50 / 2e-08 unknown protein Lus10028488 [exp] 167 / 4e-54 ND 48 / 1e-07
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119800 [exp] 120 / 1e-35 AT2G47485 66 / 2e-14 unknown protein Potri.004G095200 [exp] 112 / 2e-32 AT2G47485 58 / 2e-11 unknown protein Potri.004G095150 [exp] 112 / 2e-32 AT2G47485 58 / 2e-11 unknown protein Potri.010G119200 [exp] 90 / 9e-24 AT2G47485 57 / 3e-11 unknown protein Potri.012G053400 [exp] 40 / 6e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033571 pacid=23143408 polypeptide=Lus10033571 locus=Lus10033571.g ID=Lus10033571.BGIv1.0 annot-version=v1.0 ATGGAACTCGTTCCCAAAAAACTCTACAGCTCGTTCAGCAGGTACTGGAGGAGAAAGAGATACCAACGGGTCCACGACGGCGCTATCCGGAACAAGACAG ACAAAAAGACAGCCCGGATCACCAGGCTCGGCGGCGGCGGCGACAGCAACAACAACCGCGCGGGGAAGCTGGTGTGGAAGATAAAGGTGGTCCCGAAGCT GCGGCTGAGAGTGATCGTTCTTGCGCCGTTGAAGCTTGCCGGGAAGCTGAAGAACGGTTACTTGGATATGATGGTGAGGATTGCAGGGGCCGTGGGGCAG TTGAATACAGAGCGAGTGTTCGGGAACAAAAGGGTTCCAAAAGCAAGGCAGCTCGGGATGGGTGATGTTAATTTGGATTTCGAGGGTCGGATTATTTATG AGATGGTTAAGAACATCTCTGCTGCTCATGAATTGTCTCCCATGTAA
AA sequence Show only first row Show all	>Lus10033571 pacid=23143408 polypeptide=Lus10033571 locus=Lus10033571.g ID=Lus10033571.BGIv1.0 annot-version=v1.0 MELVPKKLYSSFSRYWRRKRYQRVHDGAIRNKTDKKTARITRLGGGGDSNNNRAGKLVWKIKVVPKLRLRVIVLAPLKLAGKLKNGYLDMMVRIAGAVGQ LNTERVFGNKRVPKARQLGMGDVNLDFEGRIIYEMVKNISAAHELSPM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47485			unknown protein		Lus10033571 [exp]	0	1
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10010534 [exp]	2.2	0.9792
AT5G57510			unknown protein		Lus10028472 [exp]	3.2	0.9778
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	13.1	0.9614
					Lus10000859 [exp]	13.3	0.9704
AT5G36930			Disease resistance protein (TI...		Lus10014671 [exp]	14.1	0.9604
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10024428 [exp]	14.1	0.9638
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10006105 [exp]	14.1	0.9658
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	14.6	0.9675
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10024486 [exp]	14.7	0.9532
AT3G50910			unknown protein		Lus10028325 [exp]	15.0	0.9589

Compare expression of checked genes

Lus10033571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.