Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66840 185 / 1e-50 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) AT5G38150 132 / 2e-32 PMI15 plastid movement impaired 15, Plant protein of unknown function (DUF827) (.1) AT5G55860 43 / 0.0009 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017614 [exp] 904 / 0 AT1G66840 268 / 3e-81 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118900 [exp] 380 / 1e-123 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.004G095800 [exp] 352 / 4e-113 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 65 / 1e-10 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10033572 pacid=23143435 polypeptide=Lus10033572 locus=Lus10033572.g ID=Lus10033572.BGIv1.0 annot-version=v1.0 ATGGATAAAACAGCATCAGACGGTCGGAGAGGAATCGGGACGGTAAACGCCGCCGTTAGCATGTTCGGAGAGAGACTCTCCGATGGAACAAGGCAGCAAT CCAACACCGGTTACACTGCGGAGCCGCCTTCGAGAACCAAGGACCTCCACATGGCGAAGCGAGACATGGCTAAGTACAGAGGAAGGCAAAGGTCTGCAGA CTCCGTCAAAATCCTAGCTGAATCAGAGCTGTCTCAGGCCAAAAGGGCTGTCAAAGACCTCGCTTCACAGATTGAGGAATCCAACGCCAAATTGATTTCC AGGAAGAAGGACATGGAAGAAGAAGAAGAAGAATCCCCAAATCCACCTACAACGACGCCAGTCTCTGCCGCTGAGGAGGAGAGTGCCAGCATTAAATCAG CCGATTACCTCCGAGTAATGAAGGAGCTGGAATTCGTTAAGAAAGAGCTCAGCAAGCTGAAGCTCGGGATGGCCACTATCATGGGGGAGAAATTGGAGGC TGAGAAAACCTCGCAGCAATCGAATGCTGCAGAGGCGGCGATAAGGAAGGAAATCGAGGAAGCGAACGAGGAGCAGGTACTCGTTGAGCTAGCGACGATT GAAGCTTTGAAGGAGAAGCAAGATATCGAATCACGGCGGGAGAAGGAAACTTCTGAATTCTCGGCGAAAGCTGAAGAGACGAGGAAGAAGATCAATGAAG CATTGGAAGAGATTGAAAGCTCCAAAGAGGTGGAGTCACAGTTAGCTGTTACTCTATACGACGCTGCTGTTTTACAGAACGAGCTGAAGCAAGCGAGAGT CATGGAGAGGAAGATTCAGAGACGCGGTGTTGGTGGCAGCTTCGGGAGTTCAGCCAGTTCTTCTTCGAAGAGAAGAGAGGAAGGGAGCGGAGGTTCAGGT TCGTCATTGTTGAAATCCATCACGAAGGAACTGGAAGATGCGAAGAAAGAATTGGAGTCGGTTAAAGAGGAAGGGATTCAGTTCATGAGCTCCATGGACA TAATCAGGAACGAGCTGAATCACGTGAAGGAAGAGGCGAATCGACTGAAGAAAGCAGAGGAAAAGACGGATTCGACGGTTCAGAATCTGAAATCGAAGCT TCTTAAGGGAAAATCCAAATTGGAGGCAGCAATCTCCGCCGAAGAGAAGGCGAAATCGGTAGCGTCGAACCTTAGCCTCACGCTGCAGCAACTGGAAACG GAAGCCGAGATTGCAAAGAAGGAAAAAGATATAATCGGAGAGGAGACGGAGAAGATCAAGGCGGAGATTCAGAAGACGGAGACGGAAATCGACATAACGG AGGAGAAATTAGAAGCTGCAATGGAAGAGTTCGAGACTATCAAGGCGAAGGAGGCTTCAACTATGAAGAATCTACAAATTCTTGTAGAGGAGGCTATGGA TGCCAGAGAATCGGCTTTGAAAGAAGGAAATTCGACGATCCATCTGTCGAGATTCGAATACGATTACCTGAATGAGAGGGCGGCGAAGGCGGAGGAGATA GCGGATTTGAAGGTGGCTGCGGCACAGGCGTGGATCGAGGCGTTGAAAGCTAGCGAGAAAGAGATACTGATGAAAGTCGACATCGCGCATAGGGAGCTTA GGGAGACGAAGGTGGAGGAAGAGAGGTCGATTGTTGCGATGAATACAGCGGCGGCTCAGGGAGATGCAACGGATTTGAAGCAACAGCATCGTCGTCGGAG CAACGTGGGTGGCAGGAAAAGGTCGGGCAGTGAAACTCCGAGGAGAATTGCAAGAGCGAGTAGTAGCGGTACTCCGACGAGGATGCGTTTGAAGCTGAGG AACACTGAGTTTTCACCGAGTCGAACGACTACCCGATCCGCCTCTGTGCCGATGAAGAAGAAATCGCCGATGCCTAATCTGTCAATGATGTTGAAGCCCC AAGAAAACCGATAA
AA sequence Show only first row Show all	>Lus10033572 pacid=23143435 polypeptide=Lus10033572 locus=Lus10033572.g ID=Lus10033572.BGIv1.0 annot-version=v1.0 MDKTASDGRRGIGTVNAAVSMFGERLSDGTRQQSNTGYTAEPPSRTKDLHMAKRDMAKYRGRQRSADSVKILAESELSQAKRAVKDLASQIEESNAKLIS RKKDMEEEEEESPNPPTTTPVSAAEEESASIKSADYLRVMKELEFVKKELSKLKLGMATIMGEKLEAEKTSQQSNAAEAAIRKEIEEANEEQVLVELATI EALKEKQDIESRREKETSEFSAKAEETRKKINEALEEIESSKEVESQLAVTLYDAAVLQNELKQARVMERKIQRRGVGGSFGSSASSSSKRREEGSGGSG SSLLKSITKELEDAKKELESVKEEGIQFMSSMDIIRNELNHVKEEANRLKKAEEKTDSTVQNLKSKLLKGKSKLEAAISAEEKAKSVASNLSLTLQQLET EAEIAKKEKDIIGEETEKIKAEIQKTETEIDITEEKLEAAMEEFETIKAKEASTMKNLQILVEEAMDARESALKEGNSTIHLSRFEYDYLNERAAKAEEI ADLKVAAAQAWIEALKASEKEILMKVDIAHRELRETKVEEERSIVAMNTAAAQGDATDLKQQHRRRSNVGGRKRSGSETPRRIARASSSGTPTRMRLKLR NTEFSPSRTTTRSASVPMKKKSPMPNLSMMLKPQENR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10033572 [exp]	0	1
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	1.4	0.9360
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10039740 [exp]	5.5	0.9069
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10013403 [exp]	6.7	0.9270
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	7.3	0.9342
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	7.7	0.9120
AT4G02920			unknown protein		Lus10042685 [exp]	14.1	0.8905
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	14.7	0.9107
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	15.5	0.8856
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	15.6	0.8924
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10042432 [exp]	16.4	0.8502

Compare expression of checked genes

Lus10033572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.