Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38220 403 / 6e-141 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 367 / 1e-127 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 340 / 8e-116 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 337 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 336 / 2e-114 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 318 / 4e-107 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G31020 295 / 7e-99 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 287 / 4e-96 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 273 / 9e-90 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 267 / 1e-86 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017617 [exp] 517 / 0 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10028497 [exp] 400 / 1e-139 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 328 / 2e-110 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 319 / 3e-107 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 316 / 3e-106 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10031953 [exp] 316 / 3e-106 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 306 / 7e-102 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 298 / 5e-100 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018081 [exp] 315 / 8e-100 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117633 [exp] 435 / 2e-153 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 429 / 6e-151 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.012G090800 [exp] 358 / 5e-123 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 351 / 6e-120 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 347 / 2e-118 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 331 / 5e-112 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 329 / 5e-111 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 323 / 5e-109 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 316 / 4e-106 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 298 / 2e-100 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033575 pacid=23143366 polypeptide=Lus10033575 locus=Lus10033575.g ID=Lus10033575.BGIv1.0 annot-version=v1.0 ATGGGCGGAGTCACCTCGTCAATTGCCGCGAAATTTGCTTTCTTCCCTCCCAGTCCGCCGTCTTACTCTGTAGTAGCTGAAGATTCCGGCGGCGGGAAAC CACTGCATATACTGGAAATTCCGAGGAGGGATGACGTGGATGTCCTGAAGCTGCCCACTCGGCGAGGGAACGAAATCGTGGCCGTCCATATAAAGCATCC AAGGGCTTCCGCTACGCTGCTGTATTCCCATGGGAATGCTGCTGATTTGGGCCAGATGTACGAGCTCTTCGTCGAGCTCAGCAATCGTCTTCGGGTTAAT CTCATGGGCTATGATTACTCCGGTTATGGACGTTCAAGTGGAAAGCCAACAGAATACAACACGTATGCCGACATAGATGCTGCATACAATTGCCTCAAGG ACCGGTACGGAGTTAAAGATGAAGATCTGATACTGTATGGTCAGTCTGTTGGTAGCGGACCAACGATTGATCTCGCTTCCCATTTGCCGACTTTAAGAGG TGTGGTTCTCCACAGTCCACTTCTTTCTGGGATGAGGGTACTCTATGCAGTCAAAAGAACATACTGGTTCGACATTTACAAGAACATCGACAAAATGGGT TTGGTGAAGTCCCCCGTCTTGATAATCCATGGAACAGCGGATGAAGTTGTGGATTGCTCCCATGGGAAGCAACTGTGGGATCTCTGCACGAACAAGTACG AACCTCTATGGATAAGCGGAGGCGGGCATTGCAACCTCGAACTCTACCCGGAATTCATAAAACATCTCAAGAAGTTTGTGGTGTCGCTAGCCAAAGCCGC AAAAGCAGCAGCTGCTGCAAACGGAAGTTCTAATAAAGCAGCAACGTCGGAGTCTGATAGCCAGAGCAAATCATCTGATCAGCCTCCGGCAGCTGCAGAT ACTTTCGAACTCGTCGACGACCTTCCTCCTCAAGTCTCGAGAAACAGCTTAGACAGCCGACTGGAGAAGAAGTCGAAGAAGTCAACGAGTAAACAGGAGA AGTCGAGGATGAGCGCTGACCGTTTCGACAGATTTCGAAGGAAAGGAGGCTTGGTCTGGTGA
AA sequence Show only first row Show all	>Lus10033575 pacid=23143366 polypeptide=Lus10033575 locus=Lus10033575.g ID=Lus10033575.BGIv1.0 annot-version=v1.0 MGGVTSSIAAKFAFFPPSPPSYSVVAEDSGGGKPLHILEIPRRDDVDVLKLPTRRGNEIVAVHIKHPRASATLLYSHGNAADLGQMYELFVELSNRLRVN LMGYDYSGYGRSSGKPTEYNTYADIDAAYNCLKDRYGVKDEDLILYGQSVGSGPTIDLASHLPTLRGVVLHSPLLSGMRVLYAVKRTYWFDIYKNIDKMG LVKSPVLIIHGTADEVVDCSHGKQLWDLCTNKYEPLWISGGGHCNLELYPEFIKHLKKFVVSLAKAAKAAAAANGSSNKAATSESDSQSKSSDQPPAAAD TFELVDDLPPQVSRNSLDSRLEKKSKKSTSKQEKSRMSADRFDRFRRKGGLVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	0	1
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10038760 [exp]	5.5	0.7183
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015476 [exp]	6.9	0.6454
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	8.9	0.7602
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	9.3	0.7403
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	9.4	0.7097
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10019782 [exp]	11.0	0.6721
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10009614 [exp]	11.0	0.7389
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10017617 [exp]	12.1	0.6774
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	12.4	0.6838
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10009055 [exp]	13.4	0.6802

Compare expression of checked genes

Lus10033575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.