Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16180 664 / 0 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G18390 412 / 9e-133 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 387 / 2e-123 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 358 / 5e-112 ATCFM3A CRM family member 3A (.1) AT3G01370 360 / 2e-111 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT4G14510 348 / 8e-108 ATCFM3B CRM family member 3B (.1) AT4G13070 79 / 9e-16 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT2G28480 79 / 3e-15 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 77 / 1e-14 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT3G27550 64 / 2e-10 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017618 [exp] 452 / 7e-154 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009031 [exp] 413 / 4e-133 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 411 / 2e-132 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 372 / 1e-115 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 377 / 4e-115 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10027610 [exp] 357 / 6e-112 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10039467 [exp] 351 / 2e-108 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10039451 [exp] 213 / 8e-62 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10040896 [exp] 83 / 8e-17 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116700 [exp] 732 / 0 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.012G056100 [exp] 417 / 3e-135 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 379 / 6e-120 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 363 / 2e-112 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 164 / 1e-45 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.013G083000 [exp] 80 / 8e-16 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 78 / 6e-15 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.007G129600 [exp] 77 / 1e-14 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 64 / 2e-10 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G074400 [exp] 53 / 6e-07 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10033576 pacid=23143542 polypeptide=Lus10033576 locus=Lus10033576.g ID=Lus10033576.BGIv1.0 annot-version=v1.0 ATGGAAGTTTCAGGGCTCAGGCTTCTGGCTAGCGCTGGGTATCCTCATCACACATCTCAAATGCATTGCAGCAGAAGCAACACTATTATGGTCTCCGCCG TCAGAATCCCCACTCCTCCTTGGGTCAAATCTCCTCTCCGCCTCAAGCCTCACGAACTCGAAAATCTCTCCAGCAATTCCACCACACGCGCTCCTTCCAA GAACCGCAAACCCGTAGATGATGATGATGATGATGAAAAAGGCAAGACTGACAGGGCTCTCACTGCAAAAGAAGGCGGGGTGCGAGGGGAGAAAGTCATG GCCAAAATCGTTCGAAGCATCGAGAATCTGTCCGCCGGTAAGCAGCAACCTCCGGTCGATTCTGGGAGTGTATTTGATCAGGAAGCGGCGAAGAAGGAGC TGCCGTGGGTGAGAGAAGAGAGGAGGGGGGTTGTGAAATACAGGATCTTGAAGGAGAAAGCGGCGACTCAGGCGGAATTGGTGCTTGATCAGGAGCTGCT AGAGAAATTGAGAGTGGAAGCTGATAAGATGAGGGTATGGGTGAAGGCGAAGAAGCTAGGGGTGACTCAGCGAGTGGTTGATGAGATAAGATCGACTTGG GAGAGCAATGAGCTTGCTAAGGTCAAGTTTGACGTCCCTTTGTGTCGCAATATGGACAGGGCTAGAGAAATCGTTGAGATGAAGACTGGTGGCCTGGTGG TTTGGACTTGGAAAGATAGTCTTGTTGTGTATAGAGGTTGCAATTACCAAATGACTAAAGATTCTGGTCTCAGCAGTAAGGAGATACACGATACACATAG CGAGGAATTGTCATTGTTGCAGAGAGAAGCAGATAGGTTGCTGGATGGCTTAGGGCCTCGATTTGTTGACTGGTGGAGTCAAAAGCCACTGCCTGTGGAT GCTGATTTACTTCCAGAAGTGGTTGCTGGATACAGGGCTCCTTTAAGGCGCTGGCCTCCTTATGGCCGACCGCAGCTGAAAGATACCGAGTTGACACACT TGAGGAAGCTTGCTCGTGGTTTACCTACCCATTTTGTTCTTGGACGGAACAGAAGGCTTCAAGGTCTAGCTCTTGCGATATTAAAGCTGTGGCAAAATAG TAACATAGCTAAAATTGCTATAAAATGGGGGGTTCCGAATACCGACAACAAGCAAATGGCATTCGAGCTGAAGCGTCTCACCGGAGGAGTGTTGTTACTT CGTAACAAGTTCATCATAATACTTTATAGGGGCAAAGACTATCTGCCTTCTGAAGTTGCAACTCTGGTAGCAGACAGAGAATCTGAGATTGGAAGATTCC ATCTGCATGAAGAAAGCATACGGGAGAAAGCAGCTGATTCAGTCCACACTGTTGAAGATCTATCAATCGACAATAGCAATATGGGAACTTTACACGAGTT CCGTGATATTCAGAACAAATTTAGAATGTTGGCAGAAGTAAAGAAAGATTCTGAACTTCGATTCGAAGCTGCAAAGGAAAACTTGGAGAGGGAATTGAGA ATCCAAGAACGTAAACTTTTCATCCTCGAGATTAAAATAGAGAAGTCAATGAGAGAGTTGACGAAACTGAATGCTGAGTGGGCGCCAACCGAGGATGATG CTGACCGTGAAATACTTACAGACGAGGAGAGAGAGTGCTTCCGGAAGATCGGCCTAAAGATGCACAGCTGCTTAGTTCTCGGAAGGCGTGGCATCTTCGA CGGGGTGGTGGAAGGCTTGCATCAGCACTGGAAACACAGAGAAGTAGTAAAGGTGATTACCATGCAGAGGACATTTACACAGGTGATTTATACCGCGAAA TCACTCGAAAAAGAAAGTGGCGGGATTCTTGTCTCAGTAGAGAAACTAAGGAAAGGTCACGCGGTACTACTTTACCGTGGCAAAAACCACCGGCGGCCGA ATAAGTTCCATTCGCAGAATCTTCTAACTAAAAGAGAGGCACTGCAACGGTCTATTCTGATGCAGAGGATTGGGTCATTGAAGTTTTTTGCTCATCAGAG ACGTCAAGTTGTCTCAAATATAAAGTCAGAGCTGGTAGGTTCCTTATTGCTCTTGTATTTCTGGTGA
AA sequence Show only first row Show all	>Lus10033576 pacid=23143542 polypeptide=Lus10033576 locus=Lus10033576.g ID=Lus10033576.BGIv1.0 annot-version=v1.0 MEVSGLRLLASAGYPHHTSQMHCSRSNTIMVSAVRIPTPPWVKSPLRLKPHELENLSSNSTTRAPSKNRKPVDDDDDDEKGKTDRALTAKEGGVRGEKVM AKIVRSIENLSAGKQQPPVDSGSVFDQEAAKKELPWVREERRGVVKYRILKEKAATQAELVLDQELLEKLRVEADKMRVWVKAKKLGVTQRVVDEIRSTW ESNELAKVKFDVPLCRNMDRAREIVEMKTGGLVVWTWKDSLVVYRGCNYQMTKDSGLSSKEIHDTHSEELSLLQREADRLLDGLGPRFVDWWSQKPLPVD ADLLPEVVAGYRAPLRRWPPYGRPQLKDTELTHLRKLARGLPTHFVLGRNRRLQGLALAILKLWQNSNIAKIAIKWGVPNTDNKQMAFELKRLTGGVLLL RNKFIIILYRGKDYLPSEVATLVADRESEIGRFHLHEESIREKAADSVHTVEDLSIDNSNMGTLHEFRDIQNKFRMLAEVKKDSELRFEAAKENLERELR IQERKLFILEIKIEKSMRELTKLNAEWAPTEDDADREILTDEERECFRKIGLKMHSCLVLGRRGIFDGVVEGLHQHWKHREVVKVITMQRTFTQVIYTAK SLEKESGGILVSVEKLRKGHAVLLYRGKNHRRPNKFHSQNLLTKREALQRSILMQRIGSLKFFAHQRRQVVSNIKSELVGSLLLLYFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10033576 [exp]	0	1
AT5G37790			Protein kinase superfamily pro...		Lus10033588 [exp]	13.8	0.7642
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	18.8	0.7260
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	26.0	0.7293
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	35.3	0.7295
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	36.7	0.7250
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10041047 [exp]	36.7	0.7051
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10035092 [exp]	40.3	0.6571
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	43.7	0.7258
AT3G16175			Thioesterase superfamily prote...		Lus10037583 [exp]	45.5	0.7169
AT1G36320			unknown protein		Lus10033109 [exp]	53.4	0.7199

Compare expression of checked genes

Lus10033576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.