Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66680 385 / 2e-132 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G60910 58 / 3e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34360 52 / 2e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 44 / 0.0002 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017619 [exp] 533 / 0 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019750 [exp] 59 / 2e-09 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 56 / 2e-08 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062400 [exp] 432 / 3e-151 AT1G66680 414 / 4e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G068550 [exp] 74 / 2e-16 AT1G66680 56 / 1e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G261000 [exp] 61 / 3e-10 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 60 / 9e-10 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.004G150200 [exp] 50 / 1e-06 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 45 / 8e-05 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 41 / 0.0009 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G068600 [exp] 0 / 1 AT1G66680 0 / 1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10033577 pacid=23143321 polypeptide=Lus10033577 locus=Lus10033577.g ID=Lus10033577.BGIv1.0 annot-version=v1.0 ATGGCCGGAATACGGTTGCCCCCGGAAGAATCAGATATCTCTCAGCAGCAAATCCGAGCTGCAACGGCCGTCGCCGGCGATCTGATCTCTGACGACGAGC GGTCCGTCGCCGCGGACTCTTGGTCCATCAAGAGCGATTATGGAAGCACCCTCGATGACGAGCAGCGCCATGCTGATGCAACCGATGCACTGTGCGCTGC AAACTTCCGTACTGCTTCGGATTACAGATATATGCGATGCAGCACCAGAAATGGGAAGTTTCCTTGTCTTTTTTGGATAATGCCAGAGCAATCCCTTGAG GTACCAGTAAACTGTTATCTATCTAGAGTGTTTCGGATTAGACCTAGTACAGAAGAGGTTATTAAGACTGGAATGGTTGTCTTCATAAATCTTATATGCC TGCTTCCGGAATTGGGGAGGAAGATAACCTATTTTGCTTACCTTGAGTATCGTGAGATATTCAGAGGGCTTGTACCTCTAGTGATTGAACGTTGCTTCCA TTTTGTGTCCAGCTCTGACAAGGAAGAGCCAGATGCTGAAGTGGTGACATCTATGCTTGGCCTCCAGAGTTATTGGGATTCTGCATATGCTGACGAGTTG TCTAATTTTCACGAGCATGGCCATGCCGGTGAAGTATGGTTTGGGGGTGATGTAATGGATGTCGTTGCTTCTTGGACAAAAAACTTATGCATTGACATCT CGCAAGGTCATATTCCAAACCATGTTAATGATACTAAATCTTCAGCTGTTGAAGACGGCGTTAAGTATTTGTCCAGCTGGAATGTGCTCGATGTTGGGAC TGGCAATGGTTTGCTCCTTCAGGATCTTGCTAAACAGGGGTTTTCTGATCTGACTGGGGTGGATTACAGCGAGGGGGCAATTGAGCTTGCACGTAATCTG GCTAATCGTGATGGGTTTTCGAATATCAAATTTATGGTTGATGATGTTCTTGAAACAAAAATAGAGAACCAGTTTCGTCTTGTCGTCGATAAAGGGACAT TGGATGCCATTGGATTGCATCCGGATGGCCCTATCAAGAGGGTCATGTATTGGGACTCGGTATCCAAGTTGGTTGCCACTGGTGGCCTGTTGGTTATTAC TTCATGTAACAGCACAAAGGACGAGTTAGTACAAGAAGTGGAGAATTACAATCAGAGGAGAGGTGAAGCCTCTGCAGATAAGGAGCCAGAAGCATCGACA GCAGCAGCAGCTATTCCGTTCAAATACGTGGATCATGTTCGATCGTATCCTACGTTCATGTTTGGTGGATCAGTGGGATCGAGGGTTGCGACTGTGGCAT TCCGTCGAAACTGA
AA sequence Show only first row Show all	>Lus10033577 pacid=23143321 polypeptide=Lus10033577 locus=Lus10033577.g ID=Lus10033577.BGIv1.0 annot-version=v1.0 MAGIRLPPEESDISQQQIRAATAVAGDLISDDERSVAADSWSIKSDYGSTLDDEQRHADATDALCAANFRTASDYRYMRCSTRNGKFPCLFWIMPEQSLE VPVNCYLSRVFRIRPSTEEVIKTGMVVFINLICLLPELGRKITYFAYLEYREIFRGLVPLVIERCFHFVSSSDKEEPDAEVVTSMLGLQSYWDSAYADEL SNFHEHGHAGEVWFGGDVMDVVASWTKNLCIDISQGHIPNHVNDTKSSAVEDGVKYLSSWNVLDVGTGNGLLLQDLAKQGFSDLTGVDYSEGAIELARNL ANRDGFSNIKFMVDDVLETKIENQFRLVVDKGTLDAIGLHPDGPIKRVMYWDSVSKLVATGGLLVITSCNSTKDELVQEVENYNQRRGEASADKEPEAST AAAAIPFKYVDHVRSYPTFMFGGSVGSRVATVAFRRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Lus10033577 [exp]	0	1
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	3.2	0.7948
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	4.4	0.8041
AT5G14230			unknown protein		Lus10022339 [exp]	7.3	0.7671
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10005038 [exp]	9.8	0.7300
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	10.8	0.7677
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	11.6	0.7873
AT4G13710			Pectin lyase-like superfamily ...		Lus10042509 [exp]	16.0	0.7125
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	16.7	0.7675
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	18.2	0.7403
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10031932 [exp]	19.8	0.6915

Compare expression of checked genes

Lus10033577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.