Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60640 74 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017621 [exp] 236 / 2e-76 AT1G60640 76 / 4e-16 unknown protein Lus10017620 [exp] 156 / 3e-46 AT5G17350 83 / 2e-20 unknown protein Lus10034636 [exp] 47 / 5e-06 AT5G17350 92 / 5e-24 unknown protein Lus10035268 [exp] 45 / 2e-05 AT5G17350 116 / 4e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094500 [exp] 129 / 4e-35 AT1G60640 76 / 8e-16 unknown protein Potri.017G121000 [exp] 122 / 3e-32 AT1G60640 69 / 2e-13 unknown protein Potri.004G094000 [exp] 72 / 8e-15 AT3G03280 143 / 1e-43 unknown protein Potri.017G121200 [exp] 64 / 5e-12 AT3G03280 145 / 7e-45 unknown protein Potri.010G116000 [exp] 49 / 6e-07 AT3G03280 131 / 4e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033578 pacid=23143369 polypeptide=Lus10033578 locus=Lus10033578.g ID=Lus10033578.BGIv1.0 annot-version=v1.0 ATGCTCCCGATGTACCGGAAGCACTCCGTAATCACCGCCTCCGACATCGCGTCGCTGTTCCTCACTGCCGATTCGCTCGTGAAGCGCCACCGCCACAGCC ACCGCGGGAAAGTCCGGGACCTGCCGGAAATTACCGCCTCCGCCGCTGCTGCCAGTAGTAGTCCGAGATTATTGACGGCGATGAGGAGTTTCGGAGGATT GGATGAGGAAACGATGTCGTCTGATGCGGCTGCGGCTGTCCAGTTCATGACGATGCATAGATTGTCGATGTCGAGGTCGAGGAAGCCGTTGCTGGATACG ATCGTTGAGGAGCCGGCGAGACATTCGATCCGGATGCTGAGGGGCGGAACAGTCGAACTTGGAACGCGGTTGTGGAAGCATAAGCTACAACGCAAGTTTG TGGGAGCAAGAAACAAAGAAGAGAACAAATACAACAAAACAAACTCTCAGCTGATGGGTTTCTTCTTACTTATTGCTGCCTTGAAGAAGATGATCAAGAG GCAGTTCTACAGGCTGGAGCATGGTGATAAAGATGAACCATCTTCAGATTCATCGTATTCCTCTGACTCTGATGTTGAAGCAGAAGCATCTGAGAATTCA GACCATGATGATGCAGTTGCTGACGATGCTGATTCTCAAGATGGCAATTGCTCCCCGTCGTCTGGTTCAACAGATGAAGATGACGAATCCGAAGATGACA AAGAATCTGGTAGAGGCTTTAGCAAACCAAACGATAGAAAGGGCGTCAGTACTACTGAGAAGGGATCCACACCAGTTGATATGCCACATTGTGTAATGCA GTTCAAGTCAGTTTATAGGTGCCGGATTTGCCCTCGAATCATTTGCTTGACCGATCAGACTATGAGAGTCCACTTGACATCAAAGAGACATGCTAGATCT GAGAAGCTGATGAAGGAGAACAGGCTGAAGTATGCAATGAACAGCGATGGTGAGATAGAGAACCAGGAGACCGCAGCAGAGATGAACGCCCGAATCATCG CAATTGCAGATGAAAAATCAAAGAGTAAGAGTAAAAACAAAGGGAGACAGCGGCAGAAGAACAGGATGAGAAAGAAGAAAAGGGAAGGTGCTCCGAAGGC CGAAAGCATAAGTAAGGAATCGACAGGCGAACTCTCGAATAAAAGGCAAAAGAAATGA
AA sequence Show only first row Show all	>Lus10033578 pacid=23143369 polypeptide=Lus10033578 locus=Lus10033578.g ID=Lus10033578.BGIv1.0 annot-version=v1.0 MLPMYRKHSVITASDIASLFLTADSLVKRHRHSHRGKVRDLPEITASAAAASSSPRLLTAMRSFGGLDEETMSSDAAAAVQFMTMHRLSMSRSRKPLLDT IVEEPARHSIRMLRGGTVELGTRLWKHKLQRKFVGARNKEENKYNKTNSQLMGFFLLIAALKKMIKRQFYRLEHGDKDEPSSDSSYSSDSDVEAEASENS DHDDAVADDADSQDGNCSPSSGSTDEDDESEDDKESGRGFSKPNDRKGVSTTEKGSTPVDMPHCVMQFKSVYRCRICPRIICLTDQTMRVHLTSKRHARS EKLMKENRLKYAMNSDGEIENQETAAEMNARIIAIADEKSKSKSKNKGRQRQKNRMRKKKREGAPKAESISKESTGELSNKRQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60640			unknown protein		Lus10033578 [exp]	0	1
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	1.0	0.9121
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031812 [exp]	4.0	0.8854
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	4.2	0.8896
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	4.5	0.8845
AT5G62290			nucleotide-sensitive chloride ...		Lus10038909 [exp]	8.0	0.8751
AT2G34570		MEE21	maternal effect embryo arrest ...		Lus10001157 [exp]	11.7	0.8934
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10042567 [exp]	16.5	0.8639
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	25.7	0.8583
AT1G13030			sphere organelles protein-rela...		Lus10036876 [exp]	27.9	0.8682
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	28.0	0.8785

Compare expression of checked genes

Lus10033578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.