Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38110 295 / 2e-102 SGA1, SGA01, ASF1B anti- silencing function 1b (.1) AT1G66740 291 / 3e-101 AtSP7, SGA2, ASF1A ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017622 [exp] 395 / 1e-142 AT1G66740 291 / 2e-101 ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094400 [exp] 327 / 6e-116 AT5G38110 294 / 2e-102 anti- silencing function 1b (.1) Potri.017G121100 [exp] 324 / 1e-114 AT1G66740 285 / 3e-99 ANTI- SILENCING FUNCTION 1A, ASF1 like histone chaperone (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF04729 [flax] [poplar] ASF1_hist_chap ASF1 like histone chaperone
Representative CDS sequence Show only first row Show all	>Lus10033579 pacid=23143302 polypeptide=Lus10033579 locus=Lus10033579.g ID=Lus10033579.BGIv1.0 annot-version=v1.0 ATGAGTGTTGTGAACATCACCAACGTCACTGTTCTGGATAATCCGGCCCCTTTCTCTTCGCCATTTCAGTTCGAGATCTCGTATGAGTGCTTGACTCCTC TTAAAGATGATCTGGAATGGAAGCTAATCTATGTGGGTTCTGCTGAAGACGAGACATACGATCAACTTTTAGAGAGTGTACTTGTCGGGCCAGTCAATGT CGGCAACTATCGCTTTGTCTTGCAGGCTGACCCTCCTGACTCGTCCAGGATCCGCGAAGAAGACATAATCGGTGTGACAGTACTCTTGCTGACATGCTCC TATCTGGGTCAGGAATTCATTCGAGTCGGCTACTACGTAAATAATGACTATGAAGAAGAGCAACTAAGAGAGGAGCCTCCGCCAAAGGTGTCGATCGACA AGGTTCAAAGAAATATCTTGTCTGACAAACCCAGGGTTACCAAGTTCCCAATCAACTTCTACCCAGAAAACAGTGAAGGTGCAGAGGAGCAACCGCCTCC TAGCGATCAACCCGCTGAAACCCCCACCAAAACCGAAGCGAAAGATGAAGAGCAACCTCTTCCCTCATCTCCTGAGCTCTCTGCAGCAGATGTAAAGGAA CTGTAG
AA sequence Show only first row Show all	>Lus10033579 pacid=23143302 polypeptide=Lus10033579 locus=Lus10033579.g ID=Lus10033579.BGIv1.0 annot-version=v1.0 MSVVNITNVTVLDNPAPFSSPFQFEISYECLTPLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDSSRIREEDIIGVTVLLLTCS YLGQEFIRVGYYVNNDYEEEQLREEPPPKVSIDKVQRNILSDKPRVTKFPINFYPENSEGAEEQPPPSDQPAETPTKTEAKDEEQPLPSSPELSAADVKE L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	0	1
AT4G28310			unknown protein		Lus10033688 [exp]	2.4	0.8290
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	4.0	0.8562
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	4.2	0.8442
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	7.7	0.8209
AT4G15790			unknown protein		Lus10008380 [exp]	8.9	0.8224
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	9.5	0.8238
AT3G15040			Protein of unknown function, D...		Lus10016988 [exp]	9.7	0.8354
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	10.6	0.8373
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	11.7	0.8441
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	14.4	0.8251

Compare expression of checked genes

Lus10033579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.