Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66730 439 / 2e-140 AtLIG6 DNA LIGASE 6 (.1) AT2G45700 192 / 3e-53 sterile alpha motif (SAM) domain-containing protein (.1) AT3G26680 157 / 4e-42 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) AT1G27410 111 / 2e-26 DNA repair metallo-beta-lactamase family protein (.1) AT1G19025 73 / 2e-13 DNA repair metallo-beta-lactamase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017623 [exp] 639 / 0 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1) Lus10038078 [exp] 204 / 2e-57 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10013876 [exp] 59 / 5e-09 AT1G19025 478 / 7e-165 DNA repair metallo-beta-lactamase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G094200 [exp] 473 / 5e-153 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.006G218300 [exp] 189 / 6e-52 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G139600 [exp] 176 / 5e-49 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) Potri.013G149650 [exp] 95 / 6e-21 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121700 [exp] 73 / 2e-14 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.007G106700 [exp] 64 / 1e-10 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121201 [exp] 49 / 1e-07 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [flax] [poplar] RMMBL_DRMBL PF07522 [flax] [poplar] DRMBL DNA repair metallo-beta-lactamase
Representative CDS sequence Show only first row Show all	>Lus10033580 pacid=23143510 polypeptide=Lus10033580 locus=Lus10033580.g ID=Lus10033580.BGIv1.0 annot-version=v1.0 ATGTCTTCTCCTCAATCCATAGACTCTCTCCTTCTCCACCGCCGCGCTCTCTCTTCCCTCTCTCTCCCTACCCCTCCCAACCATCCAGCTTCTTCTTCAC CTCTCCCTTCTTCTCTACCTCCTTCCAAATTCATCCCTGGCACCCGCTTCCGCCTCGCCTCCTCCGCCGTCCCTTCCTCCTCTTACTTCCTTTCTCACTT CCACTCCGATCATTACTCAGGTCTTTACCCTAACTGGTCCCAGGGCATCATCTTCTGTTCACAAATAACCGCCGATTTAGTGACTAGAGTTCTGAAGATT CCGCAGCAGTTCGTCTTCTCATTGCCCTTGCGGGAGACGGTGATCATCGACGGCTCTGAAGTCACACTCGTGGATGCTAATCACTGCCCAGGAGCTGTTC AGTTCTTGTTTAAGGTGCCGCCGGCCAAGGATTCCACACGTTTTCAAATGTATGTTCATACTGGCGATTTTAGATACTGTGGTTCCATGAGTGAAGACGC TTTGTTGCGTCGGTTTATCGGATGCGACGCTGTTTACTTGGATACTACTTATTGCAACCCGAAATTTGTGTTCCCGGCTCAAGATGAGGCTGTTGATTAT GTAGTTAACGTGATTGAAAATGTTCGTAAGGAGTCTATGGCTACAGGTTTGGAGAAGAAAGTCTTGTTTCTTATTGCAACTTATGTGATTGGCAAGGAGA GGATATTGCTCGAGACTGCTCGGAGGTGTAAAACCAAAGTGCTCGTGGATGGGAGAAAAATGGAGATTTTGCGGGTTTTAGGCTACGGGGAGACTGAGGG ATTTACAGAGGACAAGCTTGAGAGTGACGTTCATGTTGTTGGTTGGAATGTGTTAGGTGAGACTTGGCCTTATTTTCGTCCGAATTTTGTGAAGATGACT GAGCTTATGGAAGAAAAAGGGTACTCTAGAGTGGTTGGTTTTGTTCCTACTGGATGGACTTACGAAGTTAAGCGGAATAAGTTCTCTGTGAAGAGGAAGG ATTCGTGTGAAGTTCATCTTGTGCCGTATAGTGAACATTCAAATTATGATGAACTCAGAAGTACTCCATGGAGCTTGTTGCTTGATGAGGATGCAAACCT GCATAAAGATGAGATAGGTAAGTTTCTTCAGATTATCGGTGGTAATGATACGCTTAGAAGCTATGCTGCCACTATATTAGAGAAGACCAAGGGGGATATT TATAAGGCTCTGGATATACATTATGGCAATCCTGAGTGTATTCCTGGTAAGAATTTTGAGAGGTTGGCAGTATCCGACAAATTGGTTCAGTCCCAGAGTG TTACTAATGAGCGGTCTTATGCCCAGGGTAAAACTTCATTGCATGAAGGCGGGCGTTGGGTTTGTTGTATCAGTGAAAGAACCAGCTGTAGAATGTTCAG AGGCTATTCTTGTATCCCTTCCAGCAGAGAAATACGACCCCATAAAGCATGGTTTGTTCCTTCATCTCTAGCAGATTGGCACAAGTCCTCTGACTCGTTG ATAGCTGAAATGCTGAATGCAATTCTTAATGTTGACATACATCTACAGCTTGCTGGAAAACTGGCCAACCTGCACCATAATATTTATTCATCTTGCACGG ACCTTTGA
AA sequence Show only first row Show all	>Lus10033580 pacid=23143510 polypeptide=Lus10033580 locus=Lus10033580.g ID=Lus10033580.BGIv1.0 annot-version=v1.0 MSSPQSIDSLLLHRRALSSLSLPTPPNHPASSSPLPSSLPPSKFIPGTRFRLASSAVPSSSYFLSHFHSDHYSGLYPNWSQGIIFCSQITADLVTRVLKI PQQFVFSLPLRETVIIDGSEVTLVDANHCPGAVQFLFKVPPAKDSTRFQMYVHTGDFRYCGSMSEDALLRRFIGCDAVYLDTTYCNPKFVFPAQDEAVDY VVNVIENVRKESMATGLEKKVLFLIATYVIGKERILLETARRCKTKVLVDGRKMEILRVLGYGETEGFTEDKLESDVHVVGWNVLGETWPYFRPNFVKMT ELMEEKGYSRVVGFVPTGWTYEVKRNKFSVKRKDSCEVHLVPYSEHSNYDELRSTPWSLLLDEDANLHKDEIGKFLQIIGGNDTLRSYAATILEKTKGDI YKALDIHYGNPECIPGKNFERLAVSDKLVQSQSVTNERSYAQGKTSLHEGGRWVCCISERTSCRMFRGYSCIPSSREIRPHKAWFVPSSLADWHKSSDSL IAEMLNAILNVDIHLQLAGKLANLHHNIYSSCTDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10033580 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	1.4	0.8215
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Lus10008444 [exp]	2.8	0.7995
AT5G09690		MRS2-7, ATMGT7	ARABIDOPSIS THALIANA MAGNESIUM...		Lus10024860 [exp]	7.6	0.8004
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10026614 [exp]	7.7	0.7711
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	7.9	0.7875
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Lus10040506 [exp]	9.3	0.8003
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	10.8	0.7501
AT5G24510			60S acidic ribosomal protein f...		Lus10034864 [exp]	13.2	0.7548
AT1G68930			pentatricopeptide (PPR) repeat...		Lus10030908 [exp]	13.3	0.7877
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	13.6	0.7908

Compare expression of checked genes

Lus10033580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.