Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 119 / 1e-32 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 110 / 1e-29 Terpenoid synthases superfamily protein (.1) AT2G23800 104 / 5e-27 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 103 / 1e-26 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G29430 101 / 3e-26 Terpenoid synthases superfamily protein (.1) AT3G14530 101 / 6e-26 Terpenoid synthases superfamily protein (.1) AT3G14550 99 / 4e-25 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT3G32040 98 / 1e-24 Terpenoid synthases superfamily protein (.1) AT3G20160 97 / 2e-24 Terpenoid synthases superfamily protein (.1) AT1G49530 88 / 3e-21 GGPS6 geranylgeranyl pyrophosphate synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017624 [exp] 203 / 5e-64 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 185 / 4e-58 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 132 / 1e-37 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009137 [exp] 122 / 8e-36 AT4G36810 131 / 2e-37 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 121 / 1e-33 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 112 / 5e-30 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 111 / 9e-30 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 111 / 2e-29 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 110 / 2e-29 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 117 / 4e-32 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 117 / 8e-32 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 116 / 1e-31 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 112 / 5e-30 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 106 / 4e-28 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 78 / 2e-17 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 76 / 7e-17 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.015G043400 [exp] 51 / 6e-08 AT4G38460 121 / 4e-32 geranylgeranyl reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10033581 pacid=23143260 polypeptide=Lus10033581 locus=Lus10033581.g ID=Lus10033581.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCTTCTCAATCTCATCACCAACCCCAACCATGATCTCCTCCAAAAACGTTCAACAGTCCCGATATTCCATCTTCCTCCAAAAACCCTCCA CTCACAATCCTCTAATCTCCAACCAATCATCAGTTACCAAGTGCACATTCCCTCAATTCAACCTCCGCTCTCTTAGACTACTCCGTGCTTCTGCCTCTAC CGCCCCTGTCGCTCCTCTGCGTCAATCTGTCGACCCAACCGTCGTCTCAGATTTCGACTTCGAGAGCTACATGGTGACGAAGGCGAACCATGTGAACAAG GCGTTGGACAAGGCCATCCCCGTCCAGCGCCCTGTGAAAATCCACGAGGCCATGAGGTACTCCCTTCTGGCTGGAGGCAAGAGGGTCCGTCCGGTCCTTT GTATCGCCGCTTGTGAGATGGTTGGCGGCGACGAGTCGTTGGCGATGCCTCTTTGGCGATGCCTATGGCTTGCGCCACCGAGATGA
AA sequence Show only first row Show all	>Lus10033581 pacid=23143260 polypeptide=Lus10033581 locus=Lus10033581.g ID=Lus10033581.BGIv1.0 annot-version=v1.0 MASSFSISSPTPTMISSKNVQQSRYSIFLQKPSTHNPLISNQSSVTKCTFPQFNLRSLRLLRASASTAPVAPLRQSVDPTVVSDFDFESYMVTKANHVNK ALDKAIPVQRPVKIHEAMRYSLLAGGKRVRPVLCIAACEMVGGDESLAMPLWRCLWLAPPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	1.0	0.9800
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	1.4	0.9702
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	2.8	0.9488
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	3.9	0.9596
					Lus10008321 [exp]	6.0	0.8956
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	6.5	0.9411
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10010765 [exp]	6.9	0.9048
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	7.4	0.9454
AT5G06740			Concanavalin A-like lectin pro...		Lus10021060 [exp]	11.6	0.9139
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10025923 [exp]	13.3	0.8993

Compare expression of checked genes

Lus10033581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.