Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36810 284 / 5e-96 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 281 / 3e-95 Terpenoid synthases superfamily protein (.1) AT3G14510 243 / 7e-81 Polyprenyl synthetase family protein (.1) AT3G14530 245 / 9e-81 Terpenoid synthases superfamily protein (.1) AT2G23800 241 / 4e-79 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT3G14550 240 / 8e-79 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT2G18640 234 / 2e-76 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G20160 231 / 1e-75 Terpenoid synthases superfamily protein (.1) AT3G29430 226 / 3e-73 Terpenoid synthases superfamily protein (.1) AT3G32040 223 / 5e-72 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028509 [exp] 390 / 1e-137 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 382 / 3e-133 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 362 / 9e-127 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 332 / 6e-115 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 315 / 4e-108 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 310 / 3e-106 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 286 / 2e-96 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 283 / 3e-95 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009136 [exp] 255 / 7e-88 AT2G18620 177 / 1e-55 Terpenoid synthases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 331 / 1e-114 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 311 / 7e-107 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 295 / 2e-100 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 290 / 2e-98 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 289 / 6e-98 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 154 / 2e-45 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 151 / 2e-44 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 101 / 5e-25 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G099500 [exp] 69 / 2e-13 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101301 [exp] 67 / 5e-13 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10033582 pacid=23143400 polypeptide=Lus10033582 locus=Lus10033582.g ID=Lus10033582.BGIv1.0 annot-version=v1.0 ATGTCGTTGATTCACGACGATCTTCCATGTATGGATAACGATGACCTACGTCGTGGGAAGCCCACGAACCACAAGAAGTACGGCGAGGATACTGCTATCC TCGCTGGCGACGCTCTGTTGTCCTTCTCGTTTGAGCATGTGGCGGTCGAGACGCCTAAGATCGTGTCGCCCGAGAGAGTTGTGAGATCGATTGCTGAGCT GGGATCTGCTGTCGGGTCCGCGGGACTTGTTGCCGGTCAGATAGTGGACATCGCTAGTGAAGGGGAGAAAGTGAGTCTGGAAGAATTGGAGTACATCCAC ATCCACAAAACGGCGAGGCTGTTGGAGGCGGCGGTGGTTTGTGGCGCCATCCTCGGCGGAGCCGACGAGGAGAGCGTGAAGAAGGTGAGGAAGTACTCGA GGTGCGTGGGATTGCTGTTCCAAGTTGTGGATGATATTCTGGACGTGACAAAGTCGTCGGAGGAATTGGGAAAGACAGCCGGAAAGGATCTGGCGAGCGA CAAGGCCACTTATCCCAAGCTGTTGGGGCTGGACGGTGCCCGGAGATTCGCCGCCGAGCTTGTTGAAGAAGCCAATAAGGAATTGGCCGGATTTGATCCC GTTAAGGCCGCGCCGCTCTACCATTTCGCTAATTACATTGCTACGCGACAAAATTAG
AA sequence Show only first row Show all	>Lus10033582 pacid=23143400 polypeptide=Lus10033582 locus=Lus10033582.g ID=Lus10033582.BGIv1.0 annot-version=v1.0 MSLIHDDLPCMDNDDLRRGKPTNHKKYGEDTAILAGDALLSFSFEHVAVETPKIVSPERVVRSIAELGSAVGSAGLVAGQIVDIASEGEKVSLEELEYIH IHKTARLLEAAVVCGAILGGADEESVKKVRKYSRCVGLLFQVVDDILDVTKSSEELGKTAGKDLASDKATYPKLLGLDGARRFAAELVEEANKELAGFDP VKAAPLYHFANYIATRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033581 [exp]	1.4	0.9702
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011986 [exp]	3.5	0.9417
AT1G70850		MLP34	MLP-like protein 34 (.1.2.3)		Lus10002644 [exp]	5.5	0.9311
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10041667 [exp]	6.1	0.8752
AT5G36930			Disease resistance protein (TI...		Lus10012063 [exp]	10.9	0.8401
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	12.6	0.9382
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Lus10025903 [exp]	13.5	0.9209
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	14.4	0.9341
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	15.2	0.9071
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	15.2	0.9095

Compare expression of checked genes

Lus10033582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.