Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 244 / 9e-84 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G37740 234 / 9e-80 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G73580 232 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 230 / 2e-78 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 225 / 3e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G70810 199 / 6e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 194 / 5e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G01540 186 / 5e-61 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70800 181 / 5e-59 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 176 / 5e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017629 [exp] 327 / 8e-117 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 231 / 8e-78 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 232 / 9e-78 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042002 [exp] 214 / 8e-72 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10018005 [exp] 200 / 4e-66 AT3G17980 222 / 1e-74 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10021775 [exp] 180 / 3e-58 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001594 [exp] 163 / 2e-51 AT3G17980 187 / 7e-61 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10034591 [exp] 150 / 4e-47 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10003710 [exp] 138 / 2e-42 AT1G48590 158 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125500 [exp] 247 / 5e-85 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 242 / 3e-83 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 239 / 4e-82 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 206 / 2e-68 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G131500 [exp] 202 / 3e-67 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G004600 [exp] 140 / 9e-43 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.016G005300 [exp] 137 / 9e-42 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.011G098500 [exp] 135 / 4e-39 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 133 / 3e-38 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.003G198301 [exp] 124 / 4e-34 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10033585 pacid=23143429 polypeptide=Lus10033585 locus=Lus10033585.g ID=Lus10033585.BGIv1.0 annot-version=v1.0 ATGGAGAACATGCTGGGACTTCTGAGGATTACGGTGGTCAGAGGGATCAACCTCGCCGTTAGAGACGTCAGGAGCAGCGATCCTTATGTTATCGTCAAGA TGGGCAAACAGAAGCTAAAGACTCGAGTAGTGAAGAAAAACGTCAACCCAGAATGGAATGAAACTTTGACCCTTTCAGTGACCGACCCGAATCTTCCCGT CAAGATTGAAGTGTATGACAGGGACTTGTTCAGCAGGGACGACATGATGGGGAATGCAGAGTTCGACATCGGCCCTTTCGTGGAAGCCGTGAGGATGAAG CTGAACGGGTTGCCCGGTGGGACCATAATCACCAGAGTGCATCCCAGCAGAAAGAACTACCTCTCTGAGGAGAGCAATGTGGTTTGGGTCAATGATGAAG TTGTGCAGAAGCTATTCCTCAGGCTGCAGAATGTCGAGTGCGGGGAGGTCGAGCTTGACCTCCATTGGATTGACATCCCTGGCTCCAAGGGTCTCAAGTA G
AA sequence Show only first row Show all	>Lus10033585 pacid=23143429 polypeptide=Lus10033585 locus=Lus10033585.g ID=Lus10033585.BGIv1.0 annot-version=v1.0 MENMLGLLRITVVRGINLAVRDVRSSDPYVIVKMGKQKLKTRVVKKNVNPEWNETLTLSVTDPNLPVKIEVYDRDLFSRDDMMGNAEFDIGPFVEAVRMK LNGLPGGTIITRVHPSRKNYLSEESNVVWVNDEVVQKLFLRLQNVECGEVELDLHWIDIPGSKGLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10033585 [exp]	0	1
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	6.7	0.7824
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	9.7	0.7924
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	9.7	0.7735
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	10.8	0.7907
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	16.1	0.7675
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014611 [exp]	19.1	0.6278
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	19.2	0.7821
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10033535 [exp]	21.8	0.7626
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10004984 [exp]	24.5	0.7442
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10004368 [exp]	29.4	0.7442

Compare expression of checked genes

Lus10033585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.