Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24200 185 / 6e-48 Transcription elongation factor (TFIIS) family protein (.1) AT3G48050 68 / 3e-11 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 65 / 3e-10 BAH domain ;TFIIS helical bundle-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017630 [exp] 1363 / 0 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 746 / 0 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10009128 [exp] 724 / 0 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10033410 [exp] 78 / 3e-14 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 73 / 1e-12 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241400 [exp] 587 / 0 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.002G020000 [exp] 555 / 0 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G077700 [exp] 77 / 8e-14 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 76 / 2e-13 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 72 / 1e-12 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 70 / 1e-11 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033586 pacid=23143371 polypeptide=Lus10033586 locus=Lus10033586.g ID=Lus10033586.BGIv1.0 annot-version=v1.0 ATGACACTTGAAGACTTCTTTACCTTGACAGAGATGAAAGATGGCCTCATGGTCCCTTCTCGTGTACATGAGCTGCTTTCTGTTATGAGGAAGGAGACAG ATTTTACCGTTAAGAATATTGGTGATGCAATTAGGCAGTGGACTGCGGTTGCCAACACAATTTCTGCCACTGACAATAGAGAGTGTCTAGATATTTTTGT CCAATTAGATGGACTCAGGTATTTTGATAAATGGCTGAAGGATGCCCAGAATTACAGTAGAGGTACAAGTGATGGGTTTACAGAAGAATCTATCACAGCG CTGTTGAGAACAGTAGAAAAGCTGCAGATTGACAAAGCCAGATCTCTTTCTTCAGGGATCTTCACAACCGTCAATGATCTTCTTCACCACTCTTGTTCTC GAGTTCAGGATAGAGCTAGATCACTTTTGGATTCTTGGAAGCAAGATGAGGATTGTTCTGATACTAAACGTGATGGCCAGAATGCTCGAGGGGTCGGTGC TCTTGATGTGTCTGGCAATATGGAAACAGCTAAGAATGTATTTCTTGAAGGAAGTGATAATACCAAAAGATCTGCAGTAGAGCTTTCCAGTGATGAAGCT ACAAAATCAAGAACTGTGAATTGTTCTGAAGTGGAGAGGGTTCAAAATTTAGAAACGTGCAATAGCAAGTGTGTAACGCGTACAATCTTAGACGATGGAA ACTGTAGTGACAAATCTGCGACTGAATCTGTCATGTCAAATTGCAGTCAAGCTGGCACTTCTTTGAAAGAGAATATCTCTGTGGCCATTGTAGACGCAGC GGCTTCAACAGAGACTCACATTTCTTCTGTTCAAATAGGACATGTTGCTGAACATGAGACAGATGCTATAAATGATGCTAGCAGCTTATTGGATAGAGCA TCCTCCGTTGCCTCTGCATCCAGTCCAGCAAATATTCAAGAGATCAAGTCAGATTCTACTTTGCGGAAACATATTGAAGCAGAAGGTGGTGATAAATCTT ATAATGCTTCTGCATCTGATGATAATAGAAAAGATGTAGGTCCGACTGCAGGTGCAACAGATTATATGCTTGCTATTATTGACCGTAGTCCGCTTGTGGT CCATTCAAATTCTAAAGATGATCAACACCTTGATGTCCAGTCCATTCAAGGTGATGAAAAAGGATCGAGAACAGCTGGAGTTTTGAAGAGTACATCGACG ATGAAAGACATTGAGCTTGAACTTGAAAAGAAGCAAAGTAGTAATGGAGATGAGGAAGTGGGAGATGTTTATGCTTTCTCTAAATCAGCACTGGATACCC AGAGTTCTTTCTCGACCAATAAGAAAAAGTCTGATATTGAGTTTGAGAATGGTATTGTTGATGCTCTAGGAGCTGCACAGCAAGTTGCTCAGGAAGTTGA GAGAGATGTTGTAAATTATAGAGACCCATTGGGCACATCTTCTTCAGAGAAGACCATGGGAAATCATGATGAGGAGCTTGGTAGCCTCAAATCCATTAGT GGAAAACAAGACCAAGCACAGAATCAGTCTTTAAAACCGGTGCCTGACCAAAGCAGTCAATCACCTAAATCCAAAAGGGGGAGTAACGCAGAGAATAATA TTAATGAGTTTCAGTCCTCTCAGCTAACTGAAGCAGTTCGAGAACCAGAAGTTGCAGACAGAGGATTTTGTGGTTTTGATCTCAATGAAGAAGGCACTTC AGATGATGCAGATCGTCCTGCAGACTTAATCTCCACTCCGATTTCTGTTGTATCGGTTTCAAGGCCAGCAGCAGCTTCAGCGTCACCTGCAGCCCCATTG CAGTTTGAAGGAACCCTTGGATGGAAGGGGTCAGCAGCTACAAGTGCATTTCGTCCTGCTTCTACAGGCAAGGTTCCCGAGGGTGATAACAACGTCGAAA CAGGAACAACTAGTATTACTTCGAAACAGAGGCAGGATCGGCTTGACATCGACCTGAATGTCAGTGATGGAGATGGCAAGGCAACGGAATTGATGTTCGA GAGGAAGGCTCAATCTTCTTCAGATATGGGTACATGTAAATCAGAGAGGCCCTTCCTGGATTTAAACCGTATGAGCGATGATGGAGAGGGTCCCCCATCA AATCCGCGGAGAGGGGAAGGGCTGTTCTTCCTTCAAAATTTCCATCGTAGTCCGTCTCCTGCCTCTTCATCTTCATCGTTGCGGCCGTCATTAAAGAACT TTGATTTGAATGATAGACCTCTTCTCCATAATGATTCCCCAAACCGGGGAGTATACCATGACAAGCTTTCTCAAAGCTCAAGTCTTTATGGAGGAGGTTC CAAACAAGGTGACCCCATGATCTCTATCATGGGAGCCAAGGTTGAAGTTAGTGCCCGAACCGAAGCTAGCAGAAAGGAATTCTTCCATCAGACTCCATTC ATGTTCTTGCCAAACGGCCCTCCATCCATGCCTCTCTCGTCAACGATGTATGGATCTCGAGGTGCTGTCCCGTATATGGTGGATTCGAGAGGGATCGGTA TGATACCGCAAATTGCAGGAACTGCAACTGCTGTGCCTCAATATTCTCAGCAGCCTTTCGTCATGAACATGGCCGGTCCACCCCTCAGTTTAAACGGTGC AGGTCCATCTCAACCAAGTTCCGATCTGAATTTAGGTTTCTCGATCAATGGAGGAGGAGGAGGAAGCAGTAGGGGATTCGGGCAGTTTTTTATCGCTGGT CAAGGCAGGTCTTTAGAGGAGCGTTTGGGAATGGTTGGGAAACGTAAGGAACCAGAAGGCGGCTGGTTATTCAGATGGCAGAGGGCTCTACCTTTCGATT TCCGTACGTCTCGCGTGCTAAGCGAGTGCTCTATCGATGATTTAGCTGCCACTATTACGCAGCACCATCCCTGCACCCTGCTCCTTTGTCCGGTTGACCC GTAG
AA sequence Show only first row Show all	>Lus10033586 pacid=23143371 polypeptide=Lus10033586 locus=Lus10033586.g ID=Lus10033586.BGIv1.0 annot-version=v1.0 MTLEDFFTLTEMKDGLMVPSRVHELLSVMRKETDFTVKNIGDAIRQWTAVANTISATDNRECLDIFVQLDGLRYFDKWLKDAQNYSRGTSDGFTEESITA LLRTVEKLQIDKARSLSSGIFTTVNDLLHHSCSRVQDRARSLLDSWKQDEDCSDTKRDGQNARGVGALDVSGNMETAKNVFLEGSDNTKRSAVELSSDEA TKSRTVNCSEVERVQNLETCNSKCVTRTILDDGNCSDKSATESVMSNCSQAGTSLKENISVAIVDAAASTETHISSVQIGHVAEHETDAINDASSLLDRA SSVASASSPANIQEIKSDSTLRKHIEAEGGDKSYNASASDDNRKDVGPTAGATDYMLAIIDRSPLVVHSNSKDDQHLDVQSIQGDEKGSRTAGVLKSTST MKDIELELEKKQSSNGDEEVGDVYAFSKSALDTQSSFSTNKKKSDIEFENGIVDALGAAQQVAQEVERDVVNYRDPLGTSSSEKTMGNHDEELGSLKSIS GKQDQAQNQSLKPVPDQSSQSPKSKRGSNAENNINEFQSSQLTEAVREPEVADRGFCGFDLNEEGTSDDADRPADLISTPISVVSVSRPAAASASPAAPL QFEGTLGWKGSAATSAFRPASTGKVPEGDNNVETGTTSITSKQRQDRLDIDLNVSDGDGKATELMFERKAQSSSDMGTCKSERPFLDLNRMSDDGEGPPS NPRRGEGLFFLQNFHRSPSPASSSSSLRPSLKNFDLNDRPLLHNDSPNRGVYHDKLSQSSSLYGGGSKQGDPMISIMGAKVEVSARTEASRKEFFHQTPF MFLPNGPPSMPLSSTMYGSRGAVPYMVDSRGIGMIPQIAGTATAVPQYSQQPFVMNMAGPPLSLNGAGPSQPSSDLNLGFSINGGGGGSSRGFGQFFIAG QGRSLEERLGMVGKRKEPEGGWLFRWQRALPFDFRTSRVLSECSIDDLAATITQHHPCTLLLCPVDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24200			Transcription elongation facto...		Lus10033586 [exp]	0	1
AT4G24200			Transcription elongation facto...		Lus10017630 [exp]	3.3	0.8202
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	5.5	0.7936
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	5.9	0.7705
AT5G62910			RING/U-box superfamily protein...		Lus10004246 [exp]	6.0	0.7803
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10039971 [exp]	9.0	0.7231
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	9.1	0.7957
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	12.4	0.7800
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	17.5	0.7744
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	20.0	0.7336
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	20.7	0.7429

Compare expression of checked genes

Lus10033586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.