Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37790 592 / 0 Protein kinase superfamily protein (.1) AT1G66460 572 / 0 Protein kinase superfamily protein (.1) AT1G77280 279 / 2e-85 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 263 / 2e-82 Protein kinase superfamily protein (.1.2.3) AT1G21590 257 / 3e-77 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 253 / 4e-76 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 250 / 9e-76 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G57670 225 / 8e-67 Protein kinase superfamily protein (.2) AT2G18890 219 / 1e-66 Protein kinase superfamily protein (.1.2) AT3G05140 220 / 4e-66 RBK2 ROP binding protein kinases 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017631 [exp] 918 / 0 AT5G37790 601 / 0.0 Protein kinase superfamily protein (.1) Lus10009125 [exp] 673 / 0 AT5G37790 607 / 0.0 Protein kinase superfamily protein (.1) Lus10028518 [exp] 655 / 0 AT5G37790 592 / 0.0 Protein kinase superfamily protein (.1) Lus10028661 [exp] 271 / 2e-82 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 268 / 2e-81 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 238 / 9e-71 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008192 [exp] 231 / 2e-70 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10039518 [exp] 235 / 8e-70 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006957 [exp] 223 / 1e-68 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126500 [exp] 677 / 0 AT5G37790 658 / 0.0 Protein kinase superfamily protein (.1) Potri.004G089100 [exp] 672 / 0 AT5G37790 666 / 0.0 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 274 / 6e-84 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 267 / 2e-81 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 259 / 3e-78 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 250 / 8e-75 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 243 / 1e-72 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 241 / 5e-71 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.018G096100 [exp] 235 / 3e-70 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 234 / 6e-70 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033588 pacid=23143339 polypeptide=Lus10033588 locus=Lus10033588.g ID=Lus10033588.BGIv1.0 annot-version=v1.0 ATGGCCACGGACCACTGCTGCAACATTATCGCTACACGAAAAATGGTCTCTGGGTTTGGATTATTGTCCTGTTTCCGAGGAAGTAAGCTCGAGAAAAATG GCGGAGGAGAGGAGGAAACGACGGCGTTCGGGGATTCGGAGCACGAAAACAAGGCATGGCTTCTGGCCGAGTCAGGTGCGGAAATTGCGAATGCGGAACC CGACTCGGTTCATTCTTCCTTCAGGTTCAGTTTCTGCTCTCAGACGGAGCTTGAATCGATGAACATCAACAACAACAACTCCGCTGATTCTTCAACCACG GTGTTGATGGTGAATTTGGACAGTGGATTCAGCTCCGCCGCTCGTGGTAAGGAATGGAGTAGGGTTCAGTCTCTGGAGAGGAGTATTTCCCCAGTGTCTA ATTCCTTGATTCGGTTTCGCTACAGTGAGATTCTCGTCGCCACCAGTAATTTCTCCCAAGGTAGAGTATTGGGAAGGGGAGCTATGAGCTTTGTGTACAG AGGAAGAATTGGGTTGTTAAGGGATAGTGTGGCTATTAAGAGACTGGACAAAGAAGACAAAGAATCTTCCAAGGCATTCTGTAGAGAGTTGATGATTGCA AGCTCTCTTCATCATCACAACACTGTTCCTCTTGTGGGATTCTGTATTGATCAACACGAAGGCTTGTTCTTGGTCTACAAGTATGTTTCTGGTGGCAACT TAGACCGCCATTTACATGATAAGAAGAGAGGACTAGGCTGGTCAGTGAGGTACAAGGTTGCGGTTGGAGTTGCAGGTGCCATTGCATACATGCATAGTGG GACTGAGAGATGTGTTGTTCATAGAGATATCAAGCCCTCTAACATACTCCTCTCTTCCAAGAGAATCCCTAAGCTGTGTGATTTTGGATTGGCGACGTGG ACTTCTTCACCGTGTGTCCCTTTCCTCTGCAAAACTGTCAAGGGAACATTTGGTTACTTGGCTCCAGAGTATTTCCAGCATGGCAAGGTATCTGATAAGA CTGATGTTTATGCTTTTGGGGTGGTTCTCTTGGAGCTCATTACAGGAAGGAAACCAATTGAGGCAAGACGTCCTCCAGGGGAAGAGAATCTCGTTCAATG GGCGAAACCCTTGCTGGACAAAGGCAAAGGAGCAATCGAGGAGCTGCTCGACCCACAACTCTCGTGCTCAATATTGCGAAACAGATGTCAAATAACACAG ATGATCCAAGCTGCTGCAGCATGCTTGAGCAGCGAAGAATCCCGTAGACCCTCGATAGACGAGATCATTGCGATATTGCGAGGAGAAGAAGAGGTCCTAG CATCAGCTGCTCGTATGTTGTTGTGCAGCAGTGGCAGGAGGAAGTCCAACCTGGTTGCAGGCATTATAGATTGTTATCTTCCTCAACCTCGGGAGACGAG CAGTGAGATGAAGAGTCATTTAGCTTTGGCGATGCTCGGAGTTTTGGAACTTGAGGATGACAATCAGCTCTACTGTCGATGA
AA sequence Show only first row Show all	>Lus10033588 pacid=23143339 polypeptide=Lus10033588 locus=Lus10033588.g ID=Lus10033588.BGIv1.0 annot-version=v1.0 MATDHCCNIIATRKMVSGFGLLSCFRGSKLEKNGGGEEETTAFGDSEHENKAWLLAESGAEIANAEPDSVHSSFRFSFCSQTELESMNINNNNSADSSTT VLMVNLDSGFSSAARGKEWSRVQSLERSISPVSNSLIRFRYSEILVATSNFSQGRVLGRGAMSFVYRGRIGLLRDSVAIKRLDKEDKESSKAFCRELMIA SSLHHHNTVPLVGFCIDQHEGLFLVYKYVSGGNLDRHLHDKKRGLGWSVRYKVAVGVAGAIAYMHSGTERCVVHRDIKPSNILLSSKRIPKLCDFGLATW TSSPCVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRPPGEENLVQWAKPLLDKGKGAIEELLDPQLSCSILRNRCQITQ MIQAAAACLSSEESRRPSIDEIIAILRGEEEVLASAARMLLCSSGRRKSNLVAGIIDCYLPQPRETSSEMKSHLALAMLGVLELEDDNQLYCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37790			Protein kinase superfamily pro...		Lus10033588 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	1.4	0.8972
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	3.5	0.8726
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	4.6	0.8625
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10033576 [exp]	13.8	0.7642
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	14.7	0.8427
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	15.1	0.8442
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	15.5	0.8379
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	15.6	0.7916
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	17.2	0.8386
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	21.2	0.8307

Compare expression of checked genes

Lus10033588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.