Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13810 160 / 6e-45 Restriction endonuclease, type II-like superfamily protein (.1) AT1G67660 115 / 3e-28 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017632 [exp] 459 / 6e-161 AT1G13810 216 / 6e-69 Restriction endonuclease, type II-like superfamily protein (.1) Lus10010434 [exp] 322 / 3e-106 AT1G13810 216 / 5e-68 Restriction endonuclease, type II-like superfamily protein (.1) Lus10012108 [exp] 132 / 2e-36 AT1G13810 113 / 2e-31 Restriction endonuclease, type II-like superfamily protein (.1) Lus10025143 [exp] 100 / 4e-23 ND / Lus10011962 [exp] 95 / 1e-21 ND / Lus10021761 [exp] 82 / 1e-17 ND / Lus10003840 [exp] 81 / 5e-17 ND / Lus10003841 [exp] 81 / 6e-16 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1) Lus10012639 [exp] 77 / 3e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G222500 [exp] 258 / 7e-82 AT1G13810 242 / 1e-78 Restriction endonuclease, type II-like superfamily protein (.1) Potri.008G039800 [exp] 140 / 3e-39 AT1G13810 143 / 2e-42 Restriction endonuclease, type II-like superfamily protein (.1) Potri.010G054800 [exp] 118 / 5e-29 AT1G67660 391 / 7e-136 Restriction endonuclease, type II-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0236 [flax] [poplar] PDDEXK PF09588 [flax] [poplar] YqaJ YqaJ-like viral recombinase domain
Representative CDS sequence Show only first row Show all	>Lus10033589 pacid=23143377 polypeptide=Lus10033589 locus=Lus10033589.g ID=Lus10033589.BGIv1.0 annot-version=v1.0 ATGGATGTCAAAGTCGGCGCTCACATTCACCCATTGTTTGGGGTGCTTCATGAATATGAGGGTCTTCATATCTCAGTAGCCCCCTGTGATCTACCACAGG TAATGAGCAATGTGACCGTCAAAATTGGAAATTACTGTCATCCTCGTCGGTCCACCATCTGGAAGCCCCACAATAAGCTCCTAAGTAAGACTGAGTCCCT CGATATCCACTCTAGTGGCATACTCCTCATGTACCTGTGTAAGTCGGTTAGATTTCCCTCCTCTAACCCTAACACTAGCGGAGGCATGAAACGAGCCTGT AAAAGCCAAGTGTGGAGAAGTCAAGTGCGAAGGAGCTACGTGCGAAGAAGACAAGTGCAGAGAAGCCATGTGCTGAAAAGCCGGTACATCCCCGTACTCA AAGGAGAGCGGTGGGACCTCATCCTTATCATCATCCGGAGGAAAGGTAACCGGGTACGTAATAGGAGGATATCGGTCTGGGGAGTCGTAGATTTTCGTCC TCTTGTTCTTCTTCAAGATAACTACCTATTCCAGCTTCAAAGCGTTATATTGGACAACTTCTGTTATTGTTCATCTTCTCAAGTAAACACAACTGCAGAC GCACAAGCTTTTATGGCCACTGCTACTGAATGTGTAAGAAAATTCAGTCATTCTGCTTGTGTCTCTCCCGTTAGATCGCGTTTGTGGGAATCCGATTCCG CAGTCCTTGAAAAAGCAAGCAGCCTTCAACCATGGTTCAAAAACTGGCAGGACAAGAGGAAGAACAAGCTCACTGCAAGCACATTCGGAGGAGCAATCGG GTTATGGCGCAACCGAAGAGTACAACTCTGGTTAGAAAAACTCGGCGCCAAGGAACCATTCTCTAGCAACATAGCAGCATGGTGGAGCAACATCAAAGAG AAGGAAGCGATTCAGAAGTACGTCGAGATTACTCAGAGCAATGTGTACTTCCCGACTTTCCAAGTTTACGATCGCTATGAGAAGAAAGGTGAAGTTTCAG ATGATTGGATAGCAGCTTCAGCTGATGGATTGGTTGAGGAACATCAACATGTGTACGGACTGGATTGCAGAGGAGTGCTGGAGATAAAATGCCCTTATTT CGGACTAATGGAGATTATGGACAAGGATTGGATGGATTTTTATGTTTGGACTCCGAGAGGGAGTAAGTTGTTCAGATGCATAGGGGACAGAGAGTACCTG GAGATCTTGAGGTTGGCGCTTTCTGATTTTTGGTTGAAGCATGTCGTTCCTGCTAGGGAAATTTGCGATAAGCATAAGCTGCTGCAGAATCCTTGCTTGG AGTTGCCTTTTCTCAGGCCGGCTCGTAAACACGACTATTGTGAGTATATAGTGAACGAGAGTATAGACGGGTTGTTGACGAGTCTCCGTTGTTGTTCTGT GAAATTCGAAGATAATTCACATGAGATGGAACAGTGTAACTCCTCTTTGGTCGAAATCCAACCATTCATAGTTCTACGCAACCAGAAGAACAAGGAATAC GAAGAAAGCAACCACTTGATTGTGCTCCGACTCGGACAGTGTAGGGTGTTCGATGGGTTACAGCAGAAAACCACCAATGGTGCACTTTAA
AA sequence Show only first row Show all	>Lus10033589 pacid=23143377 polypeptide=Lus10033589 locus=Lus10033589.g ID=Lus10033589.BGIv1.0 annot-version=v1.0 MDVKVGAHIHPLFGVLHEYEGLHISVAPCDLPQVMSNVTVKIGNYCHPRRSTIWKPHNKLLSKTESLDIHSSGILLMYLCKSVRFPSSNPNTSGGMKRAC KSQVWRSQVRRSYVRRRQVQRSHVLKSRYIPVLKGERWDLILIIIRRKGNRVRNRRISVWGVVDFRPLVLLQDNYLFQLQSVILDNFCYCSSSQVNTTAD AQAFMATATECVRKFSHSACVSPVRSRLWESDSAVLEKASSLQPWFKNWQDKRKNKLTASTFGGAIGLWRNRRVQLWLEKLGAKEPFSSNIAAWWSNIKE KEAIQKYVEITQSNVYFPTFQVYDRYEKKGEVSDDWIAASADGLVEEHQHVYGLDCRGVLEIKCPYFGLMEIMDKDWMDFYVWTPRGSKLFRCIGDREYL EILRLALSDFWLKHVVPAREICDKHKLLQNPCLELPFLRPARKHDYCEYIVNESIDGLLTSLRCCSVKFEDNSHEMEQCNSSLVEIQPFIVLRNQKNKEY EESNHLIVLRLGQCRVFDGLQQKTTNGAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	0	1
					Lus10020933 [exp]	1.0	0.9309
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	5.5	0.8433
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	9.5	0.8234
					Lus10024086 [exp]	10.6	0.7846
AT2G28180		CHX08, ATCHX8	CATION/H+ EXCHANGER 8, Cation...		Lus10021415 [exp]	12.2	0.8749
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	13.4	0.8235
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10026641 [exp]	14.4	0.8302
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	15.0	0.8016
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10021539 [exp]	16.1	0.7882
					Lus10034684 [exp]	16.5	0.7347

Compare expression of checked genes

Lus10033589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.