Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62470 99 / 1e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 97 / 3e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 97 / 3e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 70 / 8e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 70 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 69 / 1e-13 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 68 / 4e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 68 / 5e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G38730 67 / 1e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 66 / 2e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017633 [exp] 438 / 2e-154 AT1G77360 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009123 [exp] 259 / 6e-84 AT1G77360 156 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028520 [exp] 253 / 1e-79 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10015741 [exp] 83 / 4e-18 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 78 / 2e-16 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 70 / 1e-13 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 67 / 8e-13 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 65 / 4e-12 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026558 [exp] 65 / 6e-12 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126600 [exp] 239 / 9e-77 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G045800 [exp] 137 / 6e-38 AT1G77360 192 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 87 / 1e-19 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 77 / 5e-16 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 72 / 1e-14 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 72 / 2e-14 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 70 / 1e-13 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 69 / 2e-13 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 69 / 3e-13 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 67 / 1e-12 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033590 pacid=23143480 polypeptide=Lus10033590 locus=Lus10033590.g ID=Lus10033590.BGIv1.0 annot-version=v1.0 ATGGAGGCTTTGAGATGTTTCGAGTTAATGAAGAGTAAAGGCTGTTGTCCCGGTATGAGGTTTCTAGCTTCTTTTGTTGAAAAATGCTGTAAAAATAACG ATGTTAGATCTGCTGATTCGGTTTGGGAGACGATGGTTGATGGTTTCAGGATCAGACCTGATGCAGGGTTATACAGCCTGATGATCGGTTCACATTGCTG TTCGAGGAACACCGACAGGGCGGTACAATTGTTCGATGAGATGGTTTGTAGAGGATTATTTCCCTATGTGCAGACGAGTAACGTGTTGTTCTGGTTATTG ATTTCAAGTAGAAGGCTGAAGGAGGCGTCGGGGTTGCTCAACGAGATGGTTAGAAACGAGTGCACCCCTAGCCAATCGAATTGCAGTCGGGCAGTTGAGG TGTGTTTGGAATCGGGTGATGCTTATATCGCTATACTGGTTTGGAAATTGATGGTGGAGAGTTGTAAAAATTCGGACTTGGAGGAGACTGGGAACTTGTT GATTGTGGGGCTGATTGAGCTGCAATTTGTTCCGGAAGCGGTAGTGTATGCTGAGAGTATGATTGAGAAAGGGATTAAGTTGACGTTATCGACTATTTCG AAGTTGAAGGAGAGGCTTACGAGAGAAAGGAAGGAGATTGTGTTTGAAGAACTGCTGAAGAAGTGGACTGGCTCCTTAAAGTAG
AA sequence Show only first row Show all	>Lus10033590 pacid=23143480 polypeptide=Lus10033590 locus=Lus10033590.g ID=Lus10033590.BGIv1.0 annot-version=v1.0 MEALRCFELMKSKGCCPGMRFLASFVEKCCKNNDVRSADSVWETMVDGFRIRPDAGLYSLMIGSHCCSRNTDRAVQLFDEMVCRGLFPYVQTSNVLFWLL ISSRRLKEASGLLNEMVRNECTPSQSNCSRAVEVCLESGDAYIAILVWKLMVESCKNSDLEETGNLLIVGLIELQFVPEAVVYAESMIEKGIKLTLSTIS KLKERLTRERKEIVFEELLKKWTGSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10033590 [exp]	0	1
					Lus10001956 [exp]	2.0	0.8275
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	3.9	0.7947
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	6.0	0.7873
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	6.6	0.8233
AT5G38250			Protein kinase family protein ...		Lus10038814 [exp]	11.0	0.7781
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10003698 [exp]	12.5	0.8056
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10000632 [exp]	13.1	0.7982
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	14.9	0.7508
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	16.4	0.7924
					Lus10019651 [exp]	17.3	0.6534

Compare expression of checked genes

Lus10033590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.