Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 121 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 95 / 9e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 77 / 1e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04130 75 / 4e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G22670 75 / 4e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 72 / 3e-14 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77405 66 / 3e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G11310 63 / 4e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49240 63 / 4e-11 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40400 63 / 6e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017633 [exp] 503 / 6e-179 AT1G77360 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009123 [exp] 328 / 4e-110 AT1G77360 156 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028520 [exp] 324 / 7e-106 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10003703 [exp] 120 / 4e-33 AT1G77360 317 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 120 / 1e-30 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 92 / 5e-21 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 81 / 8e-17 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 80 / 2e-16 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011459 [exp] 75 / 6e-15 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126600 [exp] 313 / 9e-105 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G045800 [exp] 182 / 4e-54 AT1G77360 192 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 129 / 2e-34 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 97 / 9e-23 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 92 / 5e-21 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G055500 [exp] 79 / 1e-16 AT3G04130 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G084000 [exp] 78 / 5e-16 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245500 [exp] 75 / 4e-15 AT1G20300 571 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 73 / 2e-14 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083800 [exp] 67 / 2e-12 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10033591 pacid=23143489 polypeptide=Lus10033591 locus=Lus10033591.g ID=Lus10033591.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAGATTGATATTACGGTGAGCCACCGCCATCATAACGGCCACATCCACCGCGACGCCGGGATTCCCGTCGGAAAACAGCATGCCTCGGCTT CGCCTTCCGGTTCAATTCGTGCAATCGACCGCCCAGCCTTCCCTTCGTACACCAACATCCCCAATCTCCCCTCGAAAATCAACCACCTCTGCGAAATAAT CGCCACCACTCCGTCTTCCACCGTAGAGAAAGTCCTCGCCGACTCCGGAACCGGCGGCGTCACCCAGGCGGAGATTGAGCAAGTCCTCAAGCTGGCCTAC TCCTTCCCAGCCCCCGCCGTCAAGTTCTTCCGGTGGAGTGGAATCCTTCTCAACGGAGACCACTCCGCTTACGCTTGGAACCCCGTGGTCGATCTTCTCG GTAAGAATTGTTTGTTCGACGCAATGTGGGACGCCGTCAAGTCAATGAGACGGAAAAGGTTGACCTCCCTCGCCACTTTCGCTTCCATATTCAGTAGCTA TGTAATTGCCGGTAAAATAAAGGAAGCTATTATGACATTCGAGGTCATGGATCAGTACGAATGCATTCGAGATGTCGTCGCCTTGAATTCCTTGTTGAGT GCTATATGTAGAGATGGGAAAACCGTCGACGCATCTGAATTATTGCGTGTAGCTCTCCGCCATATCATGCCTGATTCTGATTCGTATGCTATATTATTGG AAGGGTGGGAGAAGGAGATGAATGTGGTTTGCGCTAGGAAAACTTTTAGCGAAATGATCGAATGGATCGGTTGGGATCCTCGAAATGTGCCTGAAAACTT TCTTGTGCACTTTGCTTACATTTTCTGA
AA sequence Show only first row Show all	>Lus10033591 pacid=23143489 polypeptide=Lus10033591 locus=Lus10033591.g ID=Lus10033591.BGIv1.0 annot-version=v1.0 MAAEIDITVSHRHHNGHIHRDAGIPVGKQHASASPSGSIRAIDRPAFPSYTNIPNLPSKINHLCEIIATTPSSTVEKVLADSGTGGVTQAEIEQVLKLAY SFPAPAVKFFRWSGILLNGDHSAYAWNPVVDLLGKNCLFDAMWDAVKSMRRKRLTSLATFASIFSSYVIAGKIKEAIMTFEVMDQYECIRDVVALNSLLS AICRDGKTVDASELLRVALRHIMPDSDSYAILLEGWEKEMNVVCARKTFSEMIEWIGWDPRNVPENFLVHFAYIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10033591 [exp]	0	1
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	5.7	0.7504
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	6.5	0.7960
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	7.2	0.8074
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	8.3	0.7913
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	14.0	0.7808
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	14.0	0.7656
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Lus10015692 [exp]	17.0	0.7643
AT2G46940			unknown protein		Lus10007198 [exp]	19.0	0.7506
AT3G51650			unknown protein		Lus10009097 [exp]	22.4	0.7637
AT3G47850			unknown protein		Lus10042163 [exp]	23.5	0.7699

Compare expression of checked genes

Lus10033591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.