Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66470 172 / 4e-52 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 170 / 3e-51 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT1G27740 96 / 4e-23 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT2G14760 96 / 1e-22 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G33880 96 / 1e-22 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT5G43175 94 / 1e-22 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G30980 91 / 5e-21 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 90 / 2e-20 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 87 / 8e-20 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G01310 77 / 1e-15 bHLH APTX, bHLH140 APRATAXIN-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017634 [exp] 353 / 3e-123 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10001068 [exp] 94 / 4e-22 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 94 / 1e-21 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10021846 [exp] 86 / 5e-19 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10002213 [exp] 80 / 5e-18 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10033488 [exp] 78 / 3e-17 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 79 / 5e-17 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 79 / 6e-17 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024850 [exp] 78 / 1e-16 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126800 [exp] 177 / 1e-53 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.004G088900 [exp] 176 / 2e-53 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.001G294300 [exp] 96 / 2e-22 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.014G017100 [exp] 94 / 5e-22 AT2G14760 179 / 2e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G089000 [exp] 94 / 8e-22 AT2G14760 173 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G119200 [exp] 93 / 2e-21 AT4G33880 186 / 3e-55 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.006G135600 [exp] 85 / 2e-18 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.006G186600 [exp] 85 / 2e-18 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 85 / 2e-18 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.007G044600 [exp] 81 / 1e-17 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033592 pacid=23143263 polypeptide=Lus10033592 locus=Lus10033592.g ID=Lus10033592.BGIv1.0 annot-version=v1.0 ATGAACTCCGTCCAAAACTCCAGCGACCGCCGCCGCAGCTCGGTAACAATGAAAACCAATCACAGCCGTAACAACAGCGCCACAATGAGCAATAATTCGT CGTCCTCTTCCTTGGGAAGTCGAAACAGCACCACCACTACTTCCAACAATGTGGACCAACAACAACATCAGCACTTCTTATTCCATGCTCCTGATCCCCA CCTGCACGCTCCCCTGGACCCTCTTCATCACCGCTCTCTCATCGACTTCCGAGGCGGGTCCGGCAGCCTCCTTACCTTTGATCACCCGTCAACGGCCTGG GAGAATTTCAACGGCGGATGGGATGGTCCCATGGGGAATAACAATGGTGCCAATCCACCGGATCTGTCCACCACCCAGGAATTCAATGCTGTGTACCATC CCACTGCTAAGGACGACACCCCTAAGCGCCCCAATTTGGGGGAGAGCCTGCAGCCACAGAAGAAACAATGCAATAGCAGCGGTAGCGCGGCCACTAATTC GAAGCCAACGACGAATAAAATAGCAGCAAAGTCGGTCCTCGAATCGAAAGATCCACAAAGCATTGCCGCAAAGAATCGAAGAGAGCGGATTAGCGAGCGG CTGAAGACATTGCAAGAGTTGGTCCCAAATGGATCCAAGGTTGATTTGGTTACCATGTTGGAGAAGGCGATTAGCTATGTCAAGTTCCTTCAACTGCAAG TCAAGGTATTGGCAATGGACGAATTTTGGCCGGCGCAAGGCGCAAGAGCTCCCGACATATCTCAGGTGAAGGAAGCGATTGATGCCATCCTGTCGACGCA GAGAGCCAGAAAGTCTTCTTCTTCCAACTCTAACTCCCGATGA
AA sequence Show only first row Show all	>Lus10033592 pacid=23143263 polypeptide=Lus10033592 locus=Lus10033592.g ID=Lus10033592.BGIv1.0 annot-version=v1.0 MNSVQNSSDRRRSSVTMKTNHSRNNSATMSNNSSSSSLGSRNSTTTTSNNVDQQQHQHFLFHAPDPHLHAPLDPLHHRSLIDFRGGSGSLLTFDHPSTAW ENFNGGWDGPMGNNNGANPPDLSTTQEFNAVYHPTAKDDTPKRPNLGESLQPQKKQCNSSGSAATNSKPTTNKIAAKSVLESKDPQSIAAKNRRERISER LKTLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAMDEFWPAQGARAPDISQVKEAIDAILSTQRARKSSSSNSNSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10033592 [exp]	0	1
					Lus10035753 [exp]	10.4	0.8880
AT1G06930			unknown protein		Lus10009929 [exp]	13.3	0.9108
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	15.2	0.8906
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	21.4	0.9038
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	23.2	0.8973
AT3G07425			unknown protein		Lus10009587 [exp]	25.2	0.8919
AT2G45220			Plant invertase/pectin methyle...		Lus10006103 [exp]	29.2	0.8081
					Lus10005393 [exp]	29.4	0.8967
					Lus10027003 [exp]	31.2	0.8121
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10010001 [exp]	31.3	0.8953

Compare expression of checked genes

Lus10033592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.