Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03440 373 / 2e-126 ARM repeat superfamily protein (.1) AT4G12710 223 / 3e-68 ARM repeat superfamily protein (.1) AT5G14510 125 / 4e-32 ARM repeat superfamily protein (.1) AT2G23140 128 / 1e-31 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 115 / 3e-27 ARM repeat superfamily protein (.1) AT3G01400 109 / 3e-26 ARM repeat superfamily protein (.1) AT1G23030 107 / 7e-25 PUB11 ARM repeat superfamily protein (.1) AT1G67530 100 / 2e-22 ARM repeat superfamily protein (.1.2) AT2G25130 98 / 8e-22 ARM repeat superfamily protein (.1) AT4G31890 96 / 3e-21 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017635 [exp] 607 / 0 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10041090 [exp] 224 / 7e-69 AT4G12710 411 / 5e-143 ARM repeat superfamily protein (.1) Lus10036415 [exp] 221 / 2e-63 AT2G04280 828 / 0.0 unknown protein Lus10002521 [exp] 138 / 8e-37 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10022275 [exp] 125 / 4e-32 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10019308 [exp] 127 / 7e-31 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 123 / 1e-29 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 115 / 5e-27 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 110 / 2e-25 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088800 [exp] 468 / 7e-164 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.017G128100 [exp] 445 / 4e-155 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.014G170100 [exp] 235 / 4e-73 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 140 / 2e-37 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 122 / 2e-29 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 119 / 1e-28 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.016G010800 [exp] 113 / 5e-27 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 112 / 3e-26 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 109 / 3e-25 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.006G015100 [exp] 106 / 1e-24 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10033593 pacid=23143365 polypeptide=Lus10033593 locus=Lus10033593.g ID=Lus10033593.BGIv1.0 annot-version=v1.0 ATGGATTCATCTTCCTCCGGTGAGAATTGCTCTGTATTTTCTCCTTCATCTCCCGACTCCGAGTGCACTCCTCGTGGATCAGCTGCTTCCGCCTTCTCCC CCTCCCCTTCCTTCTCCTCCTCCTCCTCTTCCTCTTCCGGAGCCGTGTACCGTGCTCTCCACCTAATCCAATCCGATAACCTCAACTCCAAGCTCGAGGC CGCGAAGGAAATCCGCCGTCTCACCAAGACTTCGCAGCGGTGCCGCCGGCAGCTGAGCGATGCTGTTCCGGCGCTCGTCTCCATGCTTCGTGTTCGTGAG TACTCTGTCGACTGCTACGAGTCCGCGTTGCTTGCTCTCCTCAATCTCGCCGTCAAAGACGAACGGAACAAAAACAGCATAGTGGAAGCCGGAGCTCTAG AACCGATCATGAACTTCCTCCAGTCGCAAGATCTAAACTTGCAAGAACACGCAACAGCAGCTCTCCTCACTCTTCCCGCATCCACCCTCAACAAGCCAGT CATCACTGGCTCCGGTGCAATCCCTTTGCTAGTGGAAATCCTCAAGCACGGTAGCCCACAAGCCAAGATGGATGCCGTTATGGCTCTGTCCAATCTCTCG ACACACAATCCAACGATCAATCTGGGCTCCATACTAAAAAACAATCCCATCCCGTCCATAGTCAGCTTACTAAAATCCACCAAGAAATCATCACGAACAG CCGAGAAATGCTGCGCACTCATCGAGTCGCTCGTCGAATTTGAGGACGGCCGAGCTGCACTGACATCAGAGGAAGGCGGGATTCTGGCCGTGGTCGAAAT TGTGGAGAGTGGTTCGGTCCAGAGTCGAGAGCACGCCGTTGGAGCTCTGTTGAGCTTGTGTCAGAGCGATCGGTGTAAGTACAGAGAGCCGATATTGAAA GAAGGCGTGATTCCTGGACTACTTGAGCTTACAGTGCAAGGAACTCCGAAATCTCAAGTGAAGGCTAAGACATTGTTGCGGCTGCTGAGGGAGAGTCCAT ACTCCAGGCCGGAGTTCGAGCCGGACACTCTGGAGGATATTGTTTGTAACATTATTTCACAGATTGACGGGGATGAGCAATCGGGGAAGGCGAAGAAGAT GCTGGCTGAGATGGTTCAGGTCAGCATGGAGCAAAGTTTGAGACATTTGCAGCGGAGAGCTACTCTGTACTGTTTCTACTACTCAGGAACAGACTGCAGA GGTTTGGTGACATTGGCTGAGATCGCAGCTGCCAAACTCCAGCGCGTTTTCGAATTTATTCCGGTGTCGAGATCTCACCTAGCTACTGTCTTCGATCGTT CTGGTTTCGCTATTGGCGATGCAAGTGAGGAACACACGGTCTCTAAAACATACAATCTGGCAGCGTGCAACTCCGACAGATATTACTAG
AA sequence Show only first row Show all	>Lus10033593 pacid=23143365 polypeptide=Lus10033593 locus=Lus10033593.g ID=Lus10033593.BGIv1.0 annot-version=v1.0 MDSSSSGENCSVFSPSSPDSECTPRGSAASAFSPSPSFSSSSSSSSGAVYRALHLIQSDNLNSKLEAAKEIRRLTKTSQRCRRQLSDAVPALVSMLRVRE YSVDCYESALLALLNLAVKDERNKNSIVEAGALEPIMNFLQSQDLNLQEHATAALLTLPASTLNKPVITGSGAIPLLVEILKHGSPQAKMDAVMALSNLS THNPTINLGSILKNNPIPSIVSLLKSTKKSSRTAEKCCALIESLVEFEDGRAALTSEEGGILAVVEIVESGSVQSREHAVGALLSLCQSDRCKYREPILK EGVIPGLLELTVQGTPKSQVKAKTLLRLLRESPYSRPEFEPDTLEDIVCNIISQIDGDEQSGKAKKMLAEMVQVSMEQSLRHLQRRATLYCFYYSGTDCR GLVTLAEIAAAKLQRVFEFIPVSRSHLATVFDRSGFAIGDASEEHTVSKTYNLAACNSDRYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03440			ARM repeat superfamily protein...		Lus10033593 [exp]	0	1
AT2G45040			Matrixin family protein (.1)		Lus10028180 [exp]	3.0	0.8953
AT3G52105			unknown protein		Lus10011321 [exp]	7.7	0.8363
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10009261 [exp]	9.4	0.8621
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024585 [exp]	12.5	0.8462
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10024303 [exp]	15.2	0.8352
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003461 [exp]	21.3	0.8378
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	23.7	0.8240
AT4G28290			unknown protein		Lus10033693 [exp]	24.0	0.7898
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10026382 [exp]	24.8	0.8266
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	25.2	0.8359

Compare expression of checked genes

Lus10033593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.