Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 591 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017637 [exp] 1021 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 714 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10028521 [exp] 465 / 2e-144 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10009122 [exp] 462 / 8e-143 AT3G03380 814 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 308 / 3e-96 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 136 / 2e-35 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 588 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088600 [exp] 563 / 8e-180 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 535 / 8e-170 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033594 pacid=23143451 polypeptide=Lus10033594 locus=Lus10033594.g ID=Lus10033594.BGIv1.0 annot-version=v1.0 ATGGAAAAGACGCCGTCGACGGTGGAAGAAACGTCGTGGTTGTCGACGATGGAAGAAACGTCGTGGTTGTCGGCGGTGGAAGAAACGTTGTCGGCGGAGG AGGAGGAGTGGAAAGAGGTGATAAATAGGGTAGCAGCTGCGGTGGTGGTGATCCGTACCACCGTTTGCCGACCGTTCGATACGGAGCAACCGCGGTCAAC CTCCGCCACTGGATTTGCGGTCGATAGGGAGCGTGGTCACGATTTTGGGTTCTTTCGACATGATCCGGCATCAATTGAATTTTTGGACTATGAAGCTATT GATCTCGCCCCCGAGGCTGTTTGTGTCGGCCTCGAAATCAGAGTCGTTGGCAATGGTAGCCGTGAGAAGGCTAGAAATTTCGACTTTCCTCGCGGTCTTG TATACATTGCAAATCCGGGGTATATTTTAGGGAGGGCCGGAGTTCCTTGTCAAGCCATCATTAAGAAATTTGCAGATGTAGAGACGCCATCGATGAAGGA ACTGATCAGAATGATTCCCAAACTTCGCAGAGGAGCTCAGGTCAAACCAGCCGACGATCCACAATATCAAGCAACAAACATGGATGTCATTGAGCTCGAT TCAGATTTAGGCAATGCTTTTGATGGTGTGCTATGCAATGAGAGGGGACAGGTTCAAGCTCTATATGGAAGCTTTTACACCAAGCCGAAAAATCTGATTG TTAGAGGCATCCCAATTTACCAAGTAGTTGACAAGATTGTGCATGACTCAGATGCTGGACCGACCACTCTTGTCATCAACGGCGTTAGAAGAGCAATGCC ACTCATTCGACTTCTCGAAGTTAAACTTGGCCCGATATCACTATCCAAAGCCCGGACTTTTGGCCTTACTGATTATTGGATCAAGGCACTGTTGAAGAAG GATCCAGTGAGGAAACAGGTATTACGAGTAAAAGGGTGTCGGGCAGGATCAAAGGCTGCAAATCAATTGAGTGAAGGAGACATGTTACTGGCAATTGATG GCAAACCAGTTACATGCTTTTCCGATATCGAAAATACAGTTTTAGAGACCGGATTAGAAGATGAAGAGTGTATCAGAATGAAGACAATCGACTTGGATGG AAAGTCTGAAATCTTAACCCTAAAACAAGATTTGCTTTATTGGCCAACAGAGGAGCTCAGATTTGATCAACACACTGCAACTTGGAAAACGCAAACAAGT TCAGTTCAGCAGAGGGGGATTGATATGGCAGACACGACGTCGTCGGTGGTAGATTCCGGCGGGAAGGAAGCGGAGGAGGAGTGGAGAGAGGTGATAAACA GGGTAGCAGCTGCGGTGGTGGTGATCCGAACCACCGTTTGCCGGGCGTTCGATACGGAGCTAAGGGGATCACCCTCCGCCACTGGGTTTGTGGTGGATAA GCAGCGTGGTATTATACTTACTAATCGTCACGTCGTCCAACCTGGCCCCGTGGTGGCACAAGCTACATTTCTAAACGAAGAAGAGATTCCTATATACCCT CTTTATAGGGACCCAGTACACGATTTTGGGTTCTTTCGGTATGACCCGGCATCGATTCGATTTCTGAACTACGAAGCTATTCAACTCACCCCTGAGGCTG TATGTGTCGGGCTCGACATCAGAGTCGTTGGCAACGATAGCGGCGAGAAGCTTTCTATTCTGGCCGGCACCATTGCTCGTGTGGATCGAGAAGCTCCTCG CTATGCATCTGACGGCTACAACGACTTTAATACGTTCTATATCCAAGCAGCATCAGGAACCAAGGGTGGCTCAAGTGGTTCCCCTGTAATTGAGAAACAA GGCAGAGCAGTTGCCTTAAATGCTGGAGGCAAAACCACCAGCAGCGCATCTGCATTCTTCCTGCCGTTAGAACGGGTCGTTAGAGCACTTAAGCTTTTAC AGCAAGGCAAAGATTTCGATACCGATGTATGGAATGCTGTCTGCATTCCCCGTGGTACGTTTCAGGCGACTTTTAACTACAAAGGATTCAATGAAATTCG CCGACTTGGGGTCAGGAAAGAACGAGAAGAGATGGTGCGAGATGTTTTCCCCAACGGAATTGGAATGCTTGTGGTGGACACAGTGGTACCAGATGGTCCA GCTTCTAAACATTTGGAACCTGGTGATGTACTTGTACGCTTAAACCAGGAGGTGACCACAAGCTTTCTATCCTTGGAGACAGTTCTTGATGACTACGTAG GGAGAGAGGTTGAACTAGAAATCGACAGGGGCGACAAGACTCTTACAGTACACATAACGCATGCCTTGGTGACGGTGGATCTCCACGAATGGTACGGCTG TCCAAAGATTTACACTCGAAATGATTCTTCTGGTCTCTGGAACATACTTCCTGCTGCTCTACCAACTGATCAACTTCAAGTAGTAGACAGTATTCCAGCA ATTCTTCCAAGCAACGGAGGATCGGATGATGGTGTAAACGACAGCACCAGTGAAATGACTGCCAAGTCCTTTTCGGCAAGAACGGTGATAGAACCGTCGC TTGTGATGTGCAAGGTGAGCATTCCTCCACTATGTATGATCGATGGAGTCAATTCCAGGTACTACTCTGGGACCGGTGTCGTCGTCCATCAGTCCGAATC GTTGGGACTGATTGTTGTTGACAGAAACACCGTTCCAATTTCTGCTTGCGAAATACTGCTCTATTTCGCCGCGATTCCGGTTCAGATTCCAGGCCAGGTT GTATTTCTACATCCAGTTTATAATTATGCTATCGTAGCATACAATCCATCTGCCTTAGGTGTTGATGGTCAATCCGCAGTTCGCCCAGCACAACTACTCC CCGCTCCGTTACTGAATCACGAGGACTCAGTGTATCTGGTTGGCCTAAATAAAAACTTAGGTGCAATTTGTAAGAAATGTATTGTTACCAACCCAATTGG TCCTATAACTGTCAAATCATCCAAATATCCATATTACAAAGCAACCAATATGGAAGTCATTGAGCTCGATTCAGGTAAAACTTCTGAATCCTCAATACAC AATTCTACTAACTATTCTTTTTCGCTTGGACATGCTATAACATTCGCTAACACGAAATATGTGGGTACGTACCAACTAGATTTAGGCAGGTCTTTTGATG GTGTGCTGTGCAATGAGAAGGGACTGGTTCAAGCTCTATGGGGAAGCTTCCACACACAGCTGAAATCCGGATACTCGGCGAAAAATCAAATTGTTAGAGG CATCCCAATTTACATGGTTAGCCTAGTAGTTGATCAGATTGTGCATGGCTCAGATTCTGGACCGACGACTCTTCTTATCAATGGAGTTAGAAGAGCAATG CCACGTGTTCGACTTCTGGAAGCTGAACTCGTCCCGGTATCACTTTCCAAAGCCCGCACCTTTGGCCTGACTGATCATTGGATCAAAGCCCTGTTAAAGA AGGATCCGGTGAGGAAACAAGTTTTACGAGTAAAAGGGTGTTGGGCAGGATCAAAGGCTGCAAATCAATTGAGTGAAGGAGACATGCTACTGGCAATTAA TGGGAAACCAGTTACATGCTTTTCCGACATCGAAACTGCCTGCAAAGCACTAGACAATCATGGCCAGGATGAAAACACTGAGGGGAAGCTTCACTTTACC ATGTTACGACAGGGGCGTGAAGTTAACATGGACGTTGAAACAGACATTAGAGACGGAAATGGGACACAAAGAGTGATTAATTGGAGCGGGTTTATCATTC AAGAAACTTATTCAGCAGTTCGTGCTCGTGGATATCTACCAGAAAATGGTCATGGTGTCTATATAACTACGTACCTTGCCGGAAGCCCTGCAGAAAGATA CAATGTGTGGCCCTACCAATGGATAGTAGAAGTCAACGGCAATTCGACACCAACTCTTGATATTTTTCAAGATGTGGTCAAGGGACTAGACAATGACGAG TTTATCAGAATGAAGACCGTCAACTTAGAAGGGAAGCCTCAAATCGTAACCTTAAAACAAGATTTACTCTACTGGCCGACGGAGGAGCTTAGGTTCGATC AACACACCGCAACTTGGAAACGGTAG
AA sequence Show only first row Show all	>Lus10033594 pacid=23143451 polypeptide=Lus10033594 locus=Lus10033594.g ID=Lus10033594.BGIv1.0 annot-version=v1.0 MEKTPSTVEETSWLSTMEETSWLSAVEETLSAEEEEWKEVINRVAAAVVVIRTTVCRPFDTEQPRSTSATGFAVDRERGHDFGFFRHDPASIEFLDYEAI DLAPEAVCVGLEIRVVGNGSREKARNFDFPRGLVYIANPGYILGRAGVPCQAIIKKFADVETPSMKELIRMIPKLRRGAQVKPADDPQYQATNMDVIELD SDLGNAFDGVLCNERGQVQALYGSFYTKPKNLIVRGIPIYQVVDKIVHDSDAGPTTLVINGVRRAMPLIRLLEVKLGPISLSKARTFGLTDYWIKALLKK DPVRKQVLRVKGCRAGSKAANQLSEGDMLLAIDGKPVTCFSDIENTVLETGLEDEECIRMKTIDLDGKSEILTLKQDLLYWPTEELRFDQHTATWKTQTS SVQQRGIDMADTTSSVVDSGGKEAEEEWREVINRVAAAVVVIRTTVCRAFDTELRGSPSATGFVVDKQRGIILTNRHVVQPGPVVAQATFLNEEEIPIYP LYRDPVHDFGFFRYDPASIRFLNYEAIQLTPEAVCVGLDIRVVGNDSGEKLSILAGTIARVDREAPRYASDGYNDFNTFYIQAASGTKGGSSGSPVIEKQ GRAVALNAGGKTTSSASAFFLPLERVVRALKLLQQGKDFDTDVWNAVCIPRGTFQATFNYKGFNEIRRLGVRKEREEMVRDVFPNGIGMLVVDTVVPDGP ASKHLEPGDVLVRLNQEVTTSFLSLETVLDDYVGREVELEIDRGDKTLTVHITHALVTVDLHEWYGCPKIYTRNDSSGLWNILPAALPTDQLQVVDSIPA ILPSNGGSDDGVNDSTSEMTAKSFSARTVIEPSLVMCKVSIPPLCMIDGVNSRYYSGTGVVVHQSESLGLIVVDRNTVPISACEILLYFAAIPVQIPGQV VFLHPVYNYAIVAYNPSALGVDGQSAVRPAQLLPAPLLNHEDSVYLVGLNKNLGAICKKCIVTNPIGPITVKSSKYPYYKATNMEVIELDSGKTSESSIH NSTNYSFSLGHAITFANTKYVGTYQLDLGRSFDGVLCNEKGLVQALWGSFHTQLKSGYSAKNQIVRGIPIYMVSLVVDQIVHGSDSGPTTLLINGVRRAM PRVRLLEAELVPVSLSKARTFGLTDHWIKALLKKDPVRKQVLRVKGCWAGSKAANQLSEGDMLLAINGKPVTCFSDIETACKALDNHGQDENTEGKLHFT MLRQGREVNMDVETDIRDGNGTQRVINWSGFIIQETYSAVRARGYLPENGHGVYITTYLAGSPAERYNVWPYQWIVEVNGNSTPTLDIFQDVVKGLDNDE FIRMKTVNLEGKPQIVTLKQDLLYWPTEELRFDQHTATWKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10033594 [exp]	0	1
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	1.0	0.8608
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	5.5	0.8319
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	6.0	0.8179
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	7.2	0.8447
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	13.7	0.8075
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	17.7	0.8175
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	19.1	0.8175
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	20.7	0.8054
					Lus10033298 [exp]	21.1	0.8197
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	22.6	0.7752

Compare expression of checked genes

Lus10033594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.