Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43040 867 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT4G28600 463 / 4e-154 NPGR2 no pollen germination related 2 (.1) AT1G27460 389 / 6e-126 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017638 [exp] 1254 / 0 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 1021 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029803 [exp] 1009 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10023748 [exp] 489 / 2e-164 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 488 / 5e-164 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 440 / 6e-145 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 432 / 6e-142 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 424 / 1e-138 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 413 / 7e-135 AT4G28600 726 / 0.0 no pollen germination related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055200 [exp] 914 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.008G169500 [exp] 479 / 3e-160 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 471 / 4e-157 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 455 / 6e-151 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.014G016000 [exp] 425 / 2e-139 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 422 / 2e-138 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033595 pacid=23143531 polypeptide=Lus10033595 locus=Lus10033595.g ID=Lus10033595.BGIv1.0 annot-version=v1.0 ATGGTAGGGAGCCAATCTGCAGAATCCAGTGGGAACGAGGACCAGATACTGGTCCGCGAGTTCTGCGCAAATGGAGCTTGCATGAAAACAGATTTGTTAG AAGCTAAGCTTGATGATGGAAATATACAGGAGGCCGAGTCTTCTCTACGGGAGGGGTTGTCCCTCAACCTCGAGGAAGCAAGAGCCCTTCTTGGGAGGTT GGAATATCAGCGAGGGCATGTCGAAAGTGCTCTTCGCGTTTTCGAAGGCATTGATCTCCAAGCTGCGACAGAGAGATTGCAGGCATCCATTGCTGACAAA AATGCTCGTAAAACTTCCCAGTCAAGTGGCTCACAACATGCTGCTAGCCTCGTGCTTGAAGGAATATACTTAAAAGCCAAGTCTTTACAAAAGCTTGGAC GATCATACGACGCTGCTAAAGAGTGTAAAAGTGTGCTTGATGCAGTGGAGAACATATTCCAGCAGGGCATATCTGATGTACAAGTAGACAGTAGGTTGCA AGACACAGTTAGTCAAGCAGTGGAGCTACTTCCAGAGCTTTGGAAGCAGGCTGGTTATTTTCCTGAAGCCATAGCTGCTTATAGAAGAGCTCTTCTAAGC TCGTGGAATCTCGAGAATGACTGTTGTGCAAGGATCCAGAAAGCATTTGCAGTGTTTTTGTTGCATAGTGGAGTGGAGGCTTCAGCTCCCAGTTTAGCAT CTCAACCTGAGGGTTCCTATGTACCTAAGCATAACCTGGAAGAGGCCATTTTGCTTTTGCTGATTCTAGTCAGGAAGTTTAGCCTTGGTAAGACGACATG GGACCCTTCAGTTCTGGAGCATCTCAGCTTTGCATTATCTATATGTAGCCAAACTTGTGTTTTAGGGAAGGAACTTGAAGTGACCATGCCCGGTGTGATC CATCGCGCTGATCGTTGGAAAAGTTTAGCTCTTTGTTACAGTGGAGGAGGACAAAACCAAGCTGCTCTAAACCTACTGAGGAAGTCTCTTCACAAACACG AAAGACCTGATGACCTGATATCCCTGCTACTGGCCTCTAAAATCTGCACTGAGGATTCTAATCTTGCTGCAGAAGGAGTGGGGTATGCGCAAAGAGCCTT TGTTAAGGCAAAGGCTACTGATGAGCACATGATTGGTGTGGCTGTCCATATGATGGGTCTTTGCTTGGCAAAACAATCAAAAATTTCTTCCTCCGATTTC GAAAGGTCGCGCCTGATGTCTGAAGCCTTGAAATCTTTAGAGGCTGCATTTTCCTTGCAGCCCAACAATATAGATTTAATATTCGATCTAGGTGTTCACT ATGCAGAGCAACGGAATCTCTGTGTTGCTCTGCGTTATGCCAAGCAATATCTCGATGCAACTGGTGGCTCCATGTTAAAAGGTTGGAGGTTTCTTGCTCT GGTTTTATCTGCCCAGCAGCGATTCCCGGAGGCTGCAGTTGTTATTGATGCTGCTCTGGACGAGACTGCGAAATGGGAGCAAGGACCATTGCTCAGGTTG AAAGCTAAACTCAAGGTTGCAGTGTCTCTACCTTCAGAAGCTGTCGATACTTACCGTTATCTGCTTGCTTTGATCCAAGCTCAAAGGAAGTCCTTTGGTC CCGTCATTACTGTCTCTCAGGCTGAGAATGACAAGGTCAATGAATACGAAGTTTGGCATGGTCTTTCTGATCTGTATTCCAGACTTTCTCAGTGGGAGGA TGCTGAGGTATGTATGATGCTTGAAGCCCGTGGGGAATTACGAGACGCTCTATGCTCTTATGTCTGTGGCCATTTGACGGAGCCATCGTATGTTCCTGTG ATTATATTGGGTGCCTCCTTGTTATCCAAGACTGGTTCGGAATCATCATTACCGATAGCAAGAAGCATACTCTCTGATGCTTTGAGGGTGGAGCCAACGA ACAGGAAAGCGTGGTATTACTTAGGCATTGTCCATAGAGACGATGGACGTACAGCTGATGCTGCTGACTGCTTCCAAGCTGCTTCCATTCTCGAGGATAC CGATCCAATCGAAAGTTTCGCATCTGTCTATTGA
AA sequence Show only first row Show all	>Lus10033595 pacid=23143531 polypeptide=Lus10033595 locus=Lus10033595.g ID=Lus10033595.BGIv1.0 annot-version=v1.0 MVGSQSAESSGNEDQILVREFCANGACMKTDLLEAKLDDGNIQEAESSLREGLSLNLEEARALLGRLEYQRGHVESALRVFEGIDLQAATERLQASIADK NARKTSQSSGSQHAASLVLEGIYLKAKSLQKLGRSYDAAKECKSVLDAVENIFQQGISDVQVDSRLQDTVSQAVELLPELWKQAGYFPEAIAAYRRALLS SWNLENDCCARIQKAFAVFLLHSGVEASAPSLASQPEGSYVPKHNLEEAILLLLILVRKFSLGKTTWDPSVLEHLSFALSICSQTCVLGKELEVTMPGVI HRADRWKSLALCYSGGGQNQAALNLLRKSLHKHERPDDLISLLLASKICTEDSNLAAEGVGYAQRAFVKAKATDEHMIGVAVHMMGLCLAKQSKISSSDF ERSRLMSEALKSLEAAFSLQPNNIDLIFDLGVHYAEQRNLCVALRYAKQYLDATGGSMLKGWRFLALVLSAQQRFPEAAVVIDAALDETAKWEQGPLLRL KAKLKVAVSLPSEAVDTYRYLLALIQAQRKSFGPVITVSQAENDKVNEYEVWHGLSDLYSRLSQWEDAEVCMMLEARGELRDALCSYVCGHLTEPSYVPV IILGASLLSKTGSESSLPIARSILSDALRVEPTNRKAWYYLGIVHRDDGRTADAADCFQAASILEDTDPIESFASVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	0	1
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	1.7	0.7903
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10017638 [exp]	2.6	0.7378
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	2.8	0.7559
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	8.1	0.7303
AT1G11340			S-locus lectin protein kinase ...		Lus10013247 [exp]	11.0	0.7086
AT1G13810			Restriction endonuclease, type...		Lus10012108 [exp]	16.0	0.7680
					Lus10011453 [exp]	16.3	0.7729
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Lus10031357 [exp]	18.9	0.6159
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029691 [exp]	19.4	0.6715
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	19.9	0.7460

Compare expression of checked genes

Lus10033595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.