Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59030 721 / 0 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) AT3G21690 422 / 1e-143 MATE efflux family protein (.1) AT1G61890 402 / 1e-135 MATE efflux family protein (.1) AT1G11670 390 / 3e-131 MATE efflux family protein (.1) AT4G21910 380 / 3e-127 MATE efflux family protein (.1.2.3.4) AT5G38030 367 / 2e-122 MATE efflux family protein (.1) AT1G12950 366 / 2e-121 RSH2 root hair specific 2 (.1) AT4G21903 363 / 2e-120 MATE efflux family protein (.1.2) AT3G26590 357 / 2e-118 MATE efflux family protein (.1) AT1G47530 348 / 3e-115 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017639 [exp] 895 / 0 AT3G59030 755 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Lus10027169 [exp] 410 / 1e-138 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10002067 [exp] 399 / 2e-134 AT3G21690 702 / 0.0 MATE efflux family protein (.1) Lus10001142 [exp] 397 / 1e-133 AT3G21690 712 / 0.0 MATE efflux family protein (.1) Lus10027168 [exp] 387 / 4e-130 AT3G21690 643 / 0.0 MATE efflux family protein (.1) Lus10020049 [exp] 368 / 3e-122 AT3G21690 640 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 365 / 1e-121 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 360 / 4e-119 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 358 / 7e-119 AT1G47530 665 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055100 [exp] 693 / 0 AT3G59030 719 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.005G207500 [exp] 692 / 0 AT3G59030 690 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.005G207600 [exp] 692 / 0 AT3G59030 692 / 0.0 TRANSPARENT TESTA 12, A. THALIANA TRANSPARENT TESTA, MATE efflux family protein (.1) Potri.004G016400 [exp] 424 / 2e-144 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 418 / 3e-142 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002900 [exp] 415 / 6e-141 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 413 / 4e-140 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 410 / 6e-139 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002500 [exp] 408 / 5e-138 AT3G21690 613 / 0.0 MATE efflux family protein (.1) Potri.011G002400 [exp] 405 / 6e-137 AT3G21690 636 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10033596 pacid=23143256 polypeptide=Lus10033596 locus=Lus10033596.g ID=Lus10033596.BGIv1.0 annot-version=v1.0 ATGGCATCATCGGCCACCGAATACTCGCCTCTGCTCTCGAGGCTACACAGCTCTAACTCTGGTTTTACTCAGCTGTCCTCTGATGCCATTGAGGAGCTGC TGGAGCAGAGGCAGGTTACTACCTCGATGACCTTCCGGTGGTGGGTCCGGCTTTTTGCTTGGGAGTCAAAGCAGCTCTGGCTGCTATCGTGGGCGGCTAT TGTGGTTTCCGTGTTCAACTACATGCTCAGCTTTGTGACCCTCATGTTCATTGGCCATCTGGGTTCCTTAGAGCTTGCTGGTGCCTCCATTGCTACGGTT GGAATTCAAGGCCTTGCCTATGGCATCATGCTTGGGATGGCAAGTGCAGTGCAGACAGTATGTGGGCAAGCCTACGGAGCCAAACGGTACTCAGCAATGG GGATCATCTGCCAAAGAGCAGTCCTCCTTCATCTCATAGCAGCAACCTTCCTCTCCTTCCTCTACGTCTTCTCCGGCCCAGTGCTCCGCTCCATAGGCCA ATCGACCACCATATCGAACCAAGGCCAAGTCTTCGCAAGGGGGCTCATCCCTCAGCTGTACGCATTCGCAGTTAGCTGCCCGCTCCAGAGGTTCCTCCAG GCGCAGAACATCGTTAACCCGTTAGCATACATGGCGGTCGGAGTGTTCTTCTTGCACACATTGCTCACTTGGCTAGCCGTTGAGGTCTTGGAACTTGACA TCCTTGGTGCGGCATTGACCCTGAGCTTCTCGTGGTGGGTTTTGGTTGCGTTGAATGCTGGCTACATTTTTTGGAGCCCTAGTTGTAAGGAGACTTGGAC CGGGTTCTCGACTGTTGCTCTTAGAGGGATTTGGCCTTACTTCAAGCTCACTCTTGCTTCTGCTGTCATGCTTTGCTTGGAAGTTTGGTACAACCAAGGG TTGGTTCTTATATCAGGTCTTCTATCCAATCCAACCATTGCCTTGGATTCCATCTCTATTTGCATGTACTACTTGAACTGGGACATACAGTTCATGTTGG GGCTCAGTGCAGCTGCAAGCATTCGGGTGAGCAACGAGCTAGGAGCAGGGCATCCGAATGTGGCGAAGCTATCGGTAGGGGTGGTGAACGGTAGCAGTAT CGCGATCAGCTCGGTGTTCAGTGCTGCGGTGTTGATATGCAGAGTCGGGTTGAGCAAGTTATTCACTAGTGACTCGGAGGTTATGGAGGCGGTCTCGGAC CTAACGCCTTTACTATCCATCTCTGTTTTCCTCAATGGCATTCAACCCATTCTTTCTGGAGTGGCGATCGGGAGCGGATGGCAAGGAGTGGTGGCATATG TGAACTTGGCAACATACTACATCATCGGGCTTCCGGTTGGATGTGCTCTTGGCTTCAAAACCTCCTTGGGAGTTGCGGGAATATGGTGGGGAATGATAGT AGGAGTTGTTTTGCAGACAGTGACACTGATTGTCATCACTGCAAGAACCAACTGGGATGCTGAGGTGAGAAAAGCGGTCGAAAGGCTGAAAAACTCGGCG AATGAGAACTTGAACCTGGTGGAAGTCTAA
AA sequence Show only first row Show all	>Lus10033596 pacid=23143256 polypeptide=Lus10033596 locus=Lus10033596.g ID=Lus10033596.BGIv1.0 annot-version=v1.0 MASSATEYSPLLSRLHSSNSGFTQLSSDAIEELLEQRQVTTSMTFRWWVRLFAWESKQLWLLSWAAIVVSVFNYMLSFVTLMFIGHLGSLELAGASIATV GIQGLAYGIMLGMASAVQTVCGQAYGAKRYSAMGIICQRAVLLHLIAATFLSFLYVFSGPVLRSIGQSTTISNQGQVFARGLIPQLYAFAVSCPLQRFLQ AQNIVNPLAYMAVGVFFLHTLLTWLAVEVLELDILGAALTLSFSWWVLVALNAGYIFWSPSCKETWTGFSTVALRGIWPYFKLTLASAVMLCLEVWYNQG LVLISGLLSNPTIALDSISICMYYLNWDIQFMLGLSAAASIRVSNELGAGHPNVAKLSVGVVNGSSIAISSVFSAAVLICRVGLSKLFTSDSEVMEAVSD LTPLLSISVFLNGIQPILSGVAIGSGWQGVVAYVNLATYYIIGLPVGCALGFKTSLGVAGIWWGMIVGVVLQTVTLIVITARTNWDAEVRKAVERLKNSA NENLNLVEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	0	1
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040136 [exp]	1.4	0.9582
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	3.7	0.9301
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	6.0	0.9554
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	8.5	0.9399
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	13.4	0.9331
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	14.3	0.9337
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	14.9	0.9310
AT5G36000			unknown protein		Lus10004013 [exp]	16.5	0.9277
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	17.7	0.9272
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	18.2	0.9261

Compare expression of checked genes

Lus10033596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.