Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30330 786 / 0 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 696 / 0 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19220 511 / 7e-166 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 494 / 1e-158 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G19850 475 / 4e-154 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 389 / 6e-122 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 375 / 1e-118 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 362 / 2e-112 ARF ARF4 auxin response factor 4 (.1) AT2G46530 348 / 3e-109 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 345 / 6e-108 ARF ARF18 auxin response factor 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017641 [exp] 1417 / 0 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10033598 [exp] 1251 / 0 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10017640 [exp] 1012 / 0 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 723 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 722 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 715 / 0 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 694 / 0 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 517 / 2e-168 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 486 / 1e-160 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G207700 [exp] 1244 / 0 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 1191 / 0 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.011G091900 [exp] 806 / 0 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 793 / 0 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.004G078200 [exp] 727 / 0 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 723 / 0 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.006G077800 [exp] 531 / 4e-173 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 523 / 7e-170 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 517 / 6e-168 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G236700 [exp] 506 / 1e-165 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10033597 pacid=23143347 polypeptide=Lus10033597 locus=Lus10033597.g ID=Lus10033597.BGIv1.0 annot-version=v1.0 ATGAGGCTCTCTTCCCCTGGGTTCAATCAGCAGGCTCAGGAAGGAGGTGATAACAAGTGTCTGAATTCTGAGCTGTGGCATGCATGCGCCGGACCTCTTG TCTCTTTGCCAACTCTTGGAACTCGAGTCGTTTACTTCCCGCAAGGTCATAGCGAACAGGTTGCAGCTTCAACTAACAAGGAAGTGGACGCTCATATTCC CAACTATCCCAGCCTACCACCGCAGCTTATATGCCAGCTTCACAATGTCACCATGCATTCAGATATCGAGACCGATGAAGTCTATGCTCAAATGACATTG CAACCCTTGAGTCCGCAAGAGCAAAAGGAAGTTTATCTTTTGCCAGCAGAGTTAGGTGCTCCCAGCAAACAGCCGACCAACTACTTCTGTAAAACGTTGA CTGCAAGTGACACTAGTACTCATGGGGGATTTTCTGTTCCTCGTCGTGCTGCTGAAAAAGTCTTTCCTCCTCTTGATTACTCTCAGACTCCTCCTTGTCA GGAACTTATTGCAAGAGATCTTCATGATAACGAGTGGAAATTCAGACATGTCTTTCGAGGGCAGCCGAAAAGGCATCTGCTTACAACAGGATGGAGCGTG TTTGTCAGTGCAAAGAGGCTTGTTGCTGGTGATTCTGTCATTTTCATCTGGAATGAAAAGAACCAAATGCTCCTGGGAATTCGACATGCTAATCGCCCGC AAACTTTCATGCCTTCTTCTGTTTTATCAAGTGATAGCATGCACATTGGCTTGCTTGCAGCTGCAGCTCATGCAGCAGCTACCAACAGTCGTTTCACTAT ATTCTTTAACCCCAGAGCTAGTCCTTCAGAGTTTGTTATTCCGCTGGCCAAGTATGTTAAAGCAGTCTACCACACACGGGTCTCTGTTGGCATGCGCTTT AGGATGCTGTTTGAGACAGAAGAGTCAAGTGTACGGAGATACATGGGTACCATTACTGGGATCAGTGATCTAGATCCTGTTCGTTGGCAAAATTCACATT GGCGTTCGGTTAAGGTTGGTTGGGATGAATCTACTGCGGGGGAGAGGCAGCCACGAGTCTCCTTGTGGGAGATTGAACCATTAACAACATTTCCTATGTA TCCATCACCATTCCCTATGAGATTGAAGCGACCTTGGCCATCTGGCATGCCATCCTTTGGTCTCAAGGATAGGGATTTTAATATAAATTCTCAATTGATG TGGCTTCAAGGACTCGGGGATCAGGGAATGCAATCTATGAACTTCCAGGGCTTTGGCGTTAATCCGTGGCTTCAGCCAAGGCTTGATGCTTCTATTCAGG CTTTGCAACCTGATGTTTACCAGGCAATGGCGGCCGCTGCCCTTCAGGAAATGCGGGCTGTGGAATCTTCTAAATTAGGTTCTCAATCGGTTATGCAGTT CCAGCCGTCACAGATTGTATCTAATGACCCTGGTGCTTTGCTCCAGAGAGAGATGTTACAGCCTTCTTCCAATCTTCAGCACGCTTTTCTTCAGAACTTC CAAGAAAGCCAAGCTTCGACTCAGGCACAGCTTATACACCAACAATTGCAGCGCCATCCCATGTATAATGATCTGCAGCAACAACAGAAGCAACCTCAAC ATCCTCCACCTCAGTCACGACAGCACCAGACCTCCAATGTTGTGTCATCTTTGTCCCATCACACATCGGCTAACCCGTCTCAATCTGCATCTCTGCAATC CCAGCAGCCAGCTTTTTCTGAGCCTGTAGTAAATCCTGTTGCTGCAGGTAATGTTTCCTCGATGCACAGTGTGATGGGTTCAATGATGAGAGATGGAGCA TCCAACAATATGTTTAATCTGAACGGGTCAAATGGTGGTGGAATCTCTTCTACATTGTTGTCTAGGCAAGTGGCAGATGGTCAACGATTTTCTCCCGGTA TTGCAGATTGCACACTGCCCAAGGTGGATGCTTTGTCACAGTCAAATGCATCTGAGCATGCTACTTTGTTACCTCCATTTCCAGGCAGGGAGTATTCAGC ATACCAGGGTACTACAGATCAACAAAATAACACCTTATTTGGGATTAACATTGATTCTTCATCCTATATGCTCCAGCATGGCATGGGACATATGAGAAGT ATTGGCAATGGAAGTGACCGATTGTCTATGCCATTCGCTTCTGCTTATCCGAATGCTAATGGGAGTGAGCTTCCACTTAACTCGGATATGACTACTTCAA GTTGTGTGGATGAATCGGGTTACTTGCAGTCTTCTGAAAATGTCGACCAAGTCAATCCACCAACAAGAACCTTTGTGAAGGTTCACAAAACGGGGTCCTT TGGGCGATCGCTAGACATATCGACGTTCAGCAGCTATGATGAACTGCGTGTCGAGCTAGCTCGGTTGTTTGGGCTTGAAGGCCAACTGGAGGACCCTCAG AGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTCCTTGGCGACGACCCTTGGCAGGAATTTGTGAATAACGTCTGGTACATAA AGATACTGTCACCAGTCGAAGTGCAGCAAATGGGGAAGGAAGGTCTCAGTTCCGTGGCTTCAATCCCACCCCAGAAGAAGCTCCGGAATGCCAACATTGA CGATTACTAG
AA sequence Show only first row Show all	>Lus10033597 pacid=23143347 polypeptide=Lus10033597 locus=Lus10033597.g ID=Lus10033597.BGIv1.0 annot-version=v1.0 MRLSSPGFNQQAQEGGDNKCLNSELWHACAGPLVSLPTLGTRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLPPQLICQLHNVTMHSDIETDEVYAQMTL QPLSPQEQKEVYLLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPCQELIARDLHDNEWKFRHVFRGQPKRHLLTTGWSV FVSAKRLVAGDSVIFIWNEKNQMLLGIRHANRPQTFMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRF RMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPMRLKRPWPSGMPSFGLKDRDFNINSQLM WLQGLGDQGMQSMNFQGFGVNPWLQPRLDASIQALQPDVYQAMAAAALQEMRAVESSKLGSQSVMQFQPSQIVSNDPGALLQREMLQPSSNLQHAFLQNF QESQASTQAQLIHQQLQRHPMYNDLQQQQKQPQHPPPQSRQHQTSNVVSSLSHHTSANPSQSASLQSQQPAFSEPVVNPVAAGNVSSMHSVMGSMMRDGA SNNMFNLNGSNGGGISSTLLSRQVADGQRFSPGIADCTLPKVDALSQSNASEHATLLPPFPGREYSAYQGTTDQQNNTLFGINIDSSSYMLQHGMGHMRS IGNGSDRLSMPFASAYPNANGSELPLNSDMTTSSCVDESGYLQSSENVDQVNPPTRTFVKVHKTGSFGRSLDISTFSSYDELRVELARLFGLEGQLEDPQ RSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPVEVQQMGKEGLSSVASIPPQKKLRNANIDDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	1.0	0.9235
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	2.0	0.8837
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	4.6	0.8746
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	4.9	0.8597
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	7.1	0.8374
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	7.3	0.8011
AT3G07400			lipase class 3 family protein ...		Lus10009590 [exp]	7.3	0.8237
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	8.8	0.8224
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10040495 [exp]	9.3	0.7663
AT3G07400			lipase class 3 family protein ...		Lus10020409 [exp]	11.2	0.8056

Compare expression of checked genes

Lus10033597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.