Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39050 270 / 2e-85 PMAT1 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) AT3G29635 270 / 3e-85 HXXXD-type acyl-transferase family protein (.1) AT3G29670 253 / 7e-79 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29590 252 / 1e-78 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G39080 252 / 2e-78 HXXXD-type acyl-transferase family protein (.1) AT5G39090 250 / 8e-78 HXXXD-type acyl-transferase family protein (.1) AT5G61160 241 / 3e-74 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT3G29680 229 / 1e-69 HXXXD-type acyl-transferase family protein (.1) AT1G03495 160 / 1e-43 HXXXD-type acyl-transferase family protein (.1) AT1G03940 159 / 3e-43 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020721 [exp] 550 / 0 AT5G39050 280 / 2e-89 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10035802 [exp] 530 / 0 AT5G39050 276 / 2e-87 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 366 / 2e-122 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 346 / 2e-114 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036582 [exp] 354 / 2e-113 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10021390 [exp] 325 / 3e-106 AT3G29590 283 / 7e-91 HXXXD-type acyl-transferase family protein (.1) Lus10021389 [exp] 320 / 1e-104 AT3G29590 295 / 4e-95 HXXXD-type acyl-transferase family protein (.1) Lus10021388 [exp] 304 / 6e-98 AT3G29635 278 / 3e-88 HXXXD-type acyl-transferase family protein (.1) Lus10029276 [exp] 291 / 3e-93 AT5G39050 314 / 1e-102 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G103200 [exp] 384 / 2e-129 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 379 / 2e-127 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 375 / 8e-126 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G120700 [exp] 345 / 3e-114 AT5G39050 343 / 1e-113 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 336 / 1e-110 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 335 / 2e-110 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 334 / 7e-110 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 333 / 1e-109 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 332 / 5e-109 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 332 / 6e-109 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10033599 pacid=23143249 polypeptide=Lus10033599 locus=Lus10033599.g ID=Lus10033599.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGACTACAGTCAAAGTCGTCGACGTTCACAGAGTTACGCCGGAACCACCACCGACCCATCAATTCTCCCTCTCTCTCACCTTCTTCGACA CTTTCTGGATGAAACTCCCGCCAGTTGAGCGCATCTTCCTCTACCAACTCCCCGACTTATCGCCTTCCGTTTTCCGATCACAGCTCCTCCCTAAGCTCGT CCGCTCACTGTCTCTCACTCTCCGCCACTTCCTCCCCGTCGCCGGTAACCTCACTTGGCCTCTCGAATCTGCCCTCCCGATCATCCTCTATGCCCCTGGA GACTACGTTTCAATCACCGTCGCCGAGTCAACGGACGATTTCAACCGCCTTGCAGGAGATGGAGTTCGCGAAGCCGCTGATTCGTTACCTTACATACCGG ACTTAATCGCATCGGAGTCAACGGCGGCGATTCTGTCCCTTCAGGTCACACTGTTTCCCGGTCAAGGCTTCTGCATCGGCGTCTCCGCTCACCATGGCAT CCTCGACGGGAAAACTCAAGCTGTATTCATCAAAGCTTGGGCTTATATCTGCAAACAGATTGGAAACAACGAAGGTATACGATCAACCAATCCTCTACCG GATTTCTTAACTCCGGTGTTCGATCGGAGTCTGACCCGAATCGAGAACTCGGAAGAGATTGCAGTGGAATACTTGAACAACTGGTACAAATTCCAATTGG AGTTCCCAGGTATGAATCCCAACCCAAACCCTAGAAGCTTGGAGCTGCTATGGAGCATTGTAGACAGCAGCGTCAAGAGGCTGAGCGCGAGCTTCAAGTT CTCCAAACAGAGAATCATTCAACTAAGGGAATCGGTAGTTCTCAAATCAGCAGCAAATTTCCACTTCTCAAGCTTCGTTCTTACCTTGGCGTACACTCTG GTCTGCCTCGTGAAGGCGAAAGGATTGACAAATGACGAGACGATCCAGGCCGGATTCACAGCTGATTTCAGATCTAGATTGGATCCTCCAGTTCCGGATA ATTACTTCGGGAACTGCGTCCACGCGTTCGAGGTCATGCTGAGAGCTGCCGATGTGGTGGACGGCGGCGGCGGAGGCGTGGGGTACGTGGCGAGGAAGAT TGCGGAGACGATCGAGGCGGTGGAGAGAGGAGTGATGGTGGGAGCGAAGGAGAGGCTGACGAAGCTTCTGTTCCCCGAAGCAGATCAGTTTGCGGTCGGA GTAGCGGGCTCGCCGCGCCTGGGGATGTACGGGGTTGATTTCGGATACGGCCAGCCGGCGAAGGTGGAGATAGCGTCGACAGCGAGGACGGGAGCTATTT CAATGGCGGAGAGTGGAGATGGGAGCGGCGGGTTGGAGGTTGGAGTCGTGCTTAAGGAGGAGGAGATGGAGCTCTTCTGCGCTGCGTTTAATGATGGGTT TCGTGTGATGAATATGAATAGTGAAACTAACAAGTCCATGGCCACTGATTGTATGGCCCGTTGA
AA sequence Show only first row Show all	>Lus10033599 pacid=23143249 polypeptide=Lus10033599 locus=Lus10033599.g ID=Lus10033599.BGIv1.0 annot-version=v1.0 MAAETTVKVVDVHRVTPEPPPTHQFSLSLTFFDTFWMKLPPVERIFLYQLPDLSPSVFRSQLLPKLVRSLSLTLRHFLPVAGNLTWPLESALPIILYAPG DYVSITVAESTDDFNRLAGDGVREAADSLPYIPDLIASESTAAILSLQVTLFPGQGFCIGVSAHHGILDGKTQAVFIKAWAYICKQIGNNEGIRSTNPLP DFLTPVFDRSLTRIENSEEIAVEYLNNWYKFQLEFPGMNPNPNPRSLELLWSIVDSSVKRLSASFKFSKQRIIQLRESVVLKSAANFHFSSFVLTLAYTL VCLVKAKGLTNDETIQAGFTADFRSRLDPPVPDNYFGNCVHAFEVMLRAADVVDGGGGGVGYVARKIAETIEAVERGVMVGAKERLTKLLFPEADQFAVG VAGSPRLGMYGVDFGYGQPAKVEIASTARTGAISMAESGDGSGGLEVGVVLKEEEMELFCAAFNDGFRVMNMNSETNKSMATDCMAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	0	1
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	1.0	0.8572
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	1.4	0.8502
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	5.2	0.8267
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	5.9	0.8055
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	6.5	0.7872
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	8.7	0.7667
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	9.2	0.7718
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	10.5	0.7797
AT3G27030			unknown protein		Lus10041550 [exp]	13.1	0.7826
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	13.4	0.8150

Compare expression of checked genes

Lus10033599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.