Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30540 473 / 3e-168 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017642 [exp] 702 / 0 AT1G30540 489 / 2e-174 Actin-like ATPase superfamily protein (.1) Lus10023262 [exp] 471 / 8e-167 AT1G30540 495 / 9e-177 Actin-like ATPase superfamily protein (.1) Lus10038542 [exp] 469 / 4e-166 AT1G30540 493 / 5e-176 Actin-like ATPase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G143500 [exp] 575 / 0 AT1G30540 473 / 2e-168 Actin-like ATPase superfamily protein (.1) Potri.011G164500 [exp] 501 / 3e-179 AT1G30540 523 / 0.0 Actin-like ATPase superfamily protein (.1) Potri.001G466900 [exp] 500 / 8e-179 AT1G30540 518 / 0.0 Actin-like ATPase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01869 [flax] [poplar] BcrAD_BadFG BadF/BadG/BcrA/BcrD ATPase family
Representative CDS sequence Show only first row Show all	>Lus10033600 pacid=23143326 polypeptide=Lus10033600 locus=Lus10033600.g ID=Lus10033600.BGIv1.0 annot-version=v1.0 ATGAAGAGGTACAGGAATGGAGAAATCTGGGACTTCGAGTACGAGAACGGGCTGGCGAGTAACCGTCCGGTGATCTTAGGATTGGACGGTGGCACTACTT CCACCGTCTGTGTTTGCATCCCGATTCTCCCGTTCTCCGCTCCGTTGCCTGATCCTCTTCCGTTTCTCGCACGCGCCGTCGCCGGATGCTCCAACCACAA CAGCGTCGGCGAGCTTGCTGCTAGAGAGACATTGGAGCGAGTTATGGCAGAGGCACTCTTGAAGTCTGCTTCCAATAGATTAGCAGTGAGAGCAGTTTGT TTAGCTGTTTCAGGTGTTAATCATCAAACAGATGAGCGGCGAATCATGAAGTGGCTCAGGGACATCTTCCCTCGTCATGTAGAGCTATTTGTTCAGAATG ATGCTGTGGCAGCTTTAGCTAGTGGAACAATGGGAAAGCTTCATGGATGTGTTTTAATTGCTGGTACAGGAACAATTGCGTACGGGTTCACAGAAGACGG CCGAGAAGCTCGCGCTGCAGGTGCTGGCCCTGTCCTTGGTGACTGGGGAAGTGGCTACGGAATAGCTGCGCAGGCATTAACAGCAGTAATAAGGGCCTAT GATGGTCGAGGTCCTGAAACGATTCTTACATTGAGTATCTTGCAGTTTCTTGGACTTTCTTCTCCTGATGAACTTATAGGGTGGACTTATTTAGATCCAT CATGGGCTCGCATTGCGAATCTTGTCCCGATGGTGGTATCTTGTGCAGAGGCGGGTGATGAAGTTGCGAATCAGATACTGCAAGATTCAGTCGAAGAGTT GGCTCTAAGCGTGAAAGCTGTTGTGCACCGACTTCAATTGTGTGGTGAGGATGGGAATGCTTCTTTCCCTCTTGTGATGGTCGGTGGTGTTCTTGAAGCA AACAAGAAATGGGATATAGGGAAAGAGGTTGTGAATTGCATCTCACGAGACTACCCTGGAGCTCATCCTATTGTTCCAAAGTTAGAGCCGGCAGTGGGGG CAGCATTACTAGCATGGAATTTCTTGATGAAACAGTCTCGCAATGAGAAGACCACAGACCGCCATTGTCATCACTGA
AA sequence Show only first row Show all	>Lus10033600 pacid=23143326 polypeptide=Lus10033600 locus=Lus10033600.g ID=Lus10033600.BGIv1.0 annot-version=v1.0 MKRYRNGEIWDFEYENGLASNRPVILGLDGGTTSTVCVCIPILPFSAPLPDPLPFLARAVAGCSNHNSVGELAARETLERVMAEALLKSASNRLAVRAVC LAVSGVNHQTDERRIMKWLRDIFPRHVELFVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPVLGDWGSGYGIAAQALTAVIRAY DGRGPETILTLSILQFLGLSSPDELIGWTYLDPSWARIANLVPMVVSCAEAGDEVANQILQDSVEELALSVKAVVHRLQLCGEDGNASFPLVMVGGVLEA NKKWDIGKEVVNCISRDYPGAHPIVPKLEPAVGAALLAWNFLMKQSRNEKTTDRHCHH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	0	1
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	3.7	0.9284
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	5.3	0.9252
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	7.1	0.9146
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10020570 [exp]	8.5	0.9093
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	13.1	0.9055
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	15.5	0.8929
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	15.7	0.8699
AT5G51680			hydroxyproline-rich glycoprote...		Lus10038900 [exp]	19.8	0.8964
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	20.0	0.9135
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	21.2	0.9065

Compare expression of checked genes

Lus10033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.