Plant FIBer expression Database

Lus10033601 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G21930 59 / 2e-11 unknown protein
AT3G42150 56 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017643
[exp]
86 / 1e-21 AT3G42150 130 / 4e-41 unknown protein
Lus10011614
[exp]
84 / 3e-20 AT3G42150 132 / 2e-40 unknown protein
Lus10031451
[exp]
79 / 3e-19 AT3G42150 104 / 6e-31 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G086300
[exp]
70 / 2e-15 AT1G21930 140 / 4e-45 unknown protein
PFAM info
Representative CDS sequence
>Lus10033601 pacid=23143259 polypeptide=Lus10033601 locus=Lus10033601.g ID=Lus10033601.BGIv1.0 annot-version=v1.0
ATGATTTCGTCTGGTGCGAATTTGATCTATGGTTTCAGAAGCCTGCTCGTTTGGTCCGTGCTGCAGAAGAAGATCGGAGCTCTTGCAACTGCCAGCGGTG
TTGTCTGTTACAAGATAAGCGGAATCAATATCGAAGATTTCGATGGAATTGAGATGAAGAGGAGAAGAACCGATGAACAGGTGAAATCTCCATCAGCTGC
TGCTGCTGCTGGCGCATTCTGGGTTTCTAGTAGCATTGCTTGGCGCTCTGCATGTTCTCTTTCACATTGGCTGATACCCATTATTATATCAAGCATTGTC
CCCGTTGTGCCGAAGAACACCAGTGGAGCTAATGACTTGCGCTTTATCCCAACTGGAATCGCTATCAGAGCCCCAGCTGCTGAAAAGAACCATGTCCCCA
TGGCACTGCATATGTTGAACATTCAGCATCACTCAGTAAAAGAGCTCAATCTGGTTCGAGCTCCGAGGAAGGAATTACCACTTGAGTATTGGAGAGTGAC
GAACAGCGGGAGTTACCTGAAAATGGTCGGAGGTGAGCTGAAATCCGGCGGCGGGGATTGTAATATCTCCGAGATGGTGGTGGAGGAGAACGCTCCGATT
AGAACGGAGGAAGCTGATGAGCTGACGCCGGACGGCTTGTTCAAAGGAGAAGAAAATGAGGACTGA
AA sequence
>Lus10033601 pacid=23143259 polypeptide=Lus10033601 locus=Lus10033601.g ID=Lus10033601.BGIv1.0 annot-version=v1.0
MISSGANLIYGFRSLLVWSVLQKKIGALATASGVVCYKISGINIEDFDGIEMKRRRTDEQVKSPSAAAAAGAFWVSSSIAWRSACSLSHWLIPIIISSIV
PVVPKNTSGANDLRFIPTGIAIRAPAAEKNHVPMALHMLNIQHHSVKELNLVRAPRKELPLEYWRVTNSGSYLKMVGGELKSGGGDCNISEMVVEENAPI
RTEEADELTPDGLFKGEENED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10033601
[exp]
0 1
AT1G26480 GF14IOTA, GRF12 general regulatory factor 12 (... Lus10037089
[exp]
1.0 0.9433
AT5G62670 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPas... Lus10028203
[exp]
4.5 0.9345
AT3G60330 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase... Lus10042905
[exp]
5.2 0.9334
Lus10004778
[exp]
6.3 0.9267
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Lus10023850
[exp]
7.4 0.9222
AT1G79840 HD GL2 GLABRA 2, HD-ZIP IV family of ... Lus10011440
[exp]
8.2 0.8803
AT2G45910 U-box domain-containing protei... Lus10018835
[exp]
8.8 0.9082
AT3G60330 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase... Lus10028201
[exp]
8.9 0.8964
AT1G79400 ATCHX2 cation/H+ exchanger 2, cation/... Lus10026156
[exp]
9.2 0.8881
Lus10014515
[exp]
9.5 0.8887

Lus10033601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.