Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30990 150 / 3e-38 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT1G29240 79 / 5e-15 Protein of unknown function (DUF688) (.1) AT2G34170 52 / 2e-06 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2) AT5G45850 43 / 0.0005 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017644 [exp] 659 / 0 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029830 [exp] 194 / 2e-54 AT2G30990 139 / 2e-35 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10020709 [exp] 177 / 1e-48 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10029223 [exp] 91 / 6e-19 AT1G29240 168 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10007276 [exp] 85 / 7e-17 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1) Lus10025403 [exp] 55 / 2e-07 AT4G18630 167 / 9e-45 Protein of unknown function (DUF688) (.1) Lus10015280 [exp] 52 / 1e-06 AT5G45850 170 / 2e-45 Protein of unknown function (DUF688) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142800 [exp] 201 / 2e-55 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.011G067000 [exp] 102 / 3e-22 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.004G057800 [exp] 99 / 3e-21 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10033602 pacid=23143511 polypeptide=Lus10033602 locus=Lus10033602.g ID=Lus10033602.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAGCAACTGGATCTCAGTCAGCCATTTTTATCAGTCAGACGAACTGCCGCTTCATCAACAACACCAGTAGCAGCAGTTGTTGATATAAAAG AGTCAAAACCTGCACCTGCTTCCACCAACAAGCCTCTGCTGCCGCCACTTTCTCATTACAAACCAGACTTGAAATCAGGACCAATCAGGGTTCCAGGAAC AGTCCCCTTCGTCTGGGAGAGAAGCCCCGGAAGACCAAAGAATAACGAAACCGCCACCTCAGAACACAAAGCTCATCTTCCTCCTGTTGCTCCGAGGCTT CCTCCTGGGAAAAGAGCATCAATGTTGAATGTTCACTCAGATGCTGCTAGCTCTGAAGAAGGATCATCATCACCAGCAGCTGGATTTTCCGATTCTCGGG AAGGAGTAATGGAGGAGACAAGAAGTGAGGATTATGATGATGATGACGACGACGAGTATGAGAGGTTTGTGGATGCACTTGATACACTATCCAGGACAGA ATCTTCGTTGCTGAACTGCAGCATTTCGGGGATTAGCGGGCTGGACGGTGTGGATATGAGGCCGAATCGAACACTCTCGAGCGAATTTCATGCTAAGGAG TTCATGATTGGTAGATTCTTACCTGCTGCGCAAGCAATGGCGAACGAGAGTCCTCAGTATTCTCCACAGTATCCTACCAAGAAGCAGCCCGTTCTACGTG AGCAAGCGAGGCAAATTACGACACTCAACCAGCCTTCTCCTTCGAAACCTTCGAGGAGAGATCACATTGTACCGTACTATGCACAATGTGATAATAATTC GGTGGACGAGGATGATGATGATTACAGCGAACCGGACACTTCTGCGCTAGGTGTTTGTGGTTTCTTCCCTAGTTTCTGCTTGCAGAATCGATTGAATCCC GTTCCGGGGATTAGAACTCCGGCTTCTTCTTTCAGGACCAGACGAGATAAGTATGATAAGGCTGCTGAACATGGGAGAAGAGTAATGAATGAACCACCTC GACGACAATCAGGAAATCGTATCGATGATTCTCAGACACGGTCCCAGCCGGCTGATCCGAGTAATAATGCTGGATGGTCTCATAATTATGAATCTTCTCA ACCTAATGCCTTCAAAGCTAAAGGCTTTCTTGGAGTTCCTGCAGAAAGGCATAATAATAAGGGTTTGGAGACAATGGGATCTATTCTGGCTGTTAAGGAA GTCATCAGTTTCGCCGAATTATTAGCACACGACGATCTAGAATGGGAATCGAGGAAGAAAACACTGCACATCGATTCGAAGGTAAGCAAGTCAGAAGAAA AGATTACTGAAAGTATTCAAAAGTCTGTACCTTTTGGTGCTTGTGACCGCCCATCTCCGGACAATGTATGTCGAGCTGATGTTCGTCGAGATCAGAACCT TATGCTTGCTGCTCCTACAACATTGGTGAAGATTCCACCAGCTAATGAAGATCGCAAGGAACTAAACGATTCTTCTCTAGGATTGGTGAAGGAATCTACA GAATACACAAGGCGAAAACTCGGTGGTCGTGGTGGTGGCGGTGATAATAACACAAGGCCTAGTCAAAGAAAACCTTGCCCTCTGCCATTACCATTACCGA AGTCTCCATCGGAGTCGTGGCTGAAGAAAGCTCTGCCTACCGTTTCGTCGAGAACTCAGATGTCCAAATCTCCCCTTGGCATGATTCTCATGCATCATCC AAAAGAAGTTGAAGGTCACAACACAGATCCAACGTGGGAAACTATAGTGAAGAGTTCTGGTGAGAAGAACAGGAGGTTTCAGTTCTCTGAGGACAATGAA TGGGGGGCTCCACTTGGATGCCTAGCCAGCCGTCGAGCATCGTATCGAATCCACCGCCGCCTTTTGATGAGTTTCAACAGATCTTTCTACTGGAATTCGA ATGTGTCGAGATACCAATTGATTGATTGTCGTGGACAGGTGATTGGTGGGACGACTAGTAAACTGTCACGCTCCATCTGTCCTGGCTCATGA
AA sequence Show only first row Show all	>Lus10033602 pacid=23143511 polypeptide=Lus10033602 locus=Lus10033602.g ID=Lus10033602.BGIv1.0 annot-version=v1.0 MEEKQLDLSQPFLSVRRTAASSTTPVAAVVDIKESKPAPASTNKPLLPPLSHYKPDLKSGPIRVPGTVPFVWERSPGRPKNNETATSEHKAHLPPVAPRL PPGKRASMLNVHSDAASSEEGSSSPAAGFSDSREGVMEETRSEDYDDDDDDEYERFVDALDTLSRTESSLLNCSISGISGLDGVDMRPNRTLSSEFHAKE FMIGRFLPAAQAMANESPQYSPQYPTKKQPVLREQARQITTLNQPSPSKPSRRDHIVPYYAQCDNNSVDEDDDDYSEPDTSALGVCGFFPSFCLQNRLNP VPGIRTPASSFRTRRDKYDKAAEHGRRVMNEPPRRQSGNRIDDSQTRSQPADPSNNAGWSHNYESSQPNAFKAKGFLGVPAERHNNKGLETMGSILAVKE VISFAELLAHDDLEWESRKKTLHIDSKVSKSEEKITESIQKSVPFGACDRPSPDNVCRADVRRDQNLMLAAPTTLVKIPPANEDRKELNDSSLGLVKEST EYTRRKLGGRGGGGDNNTRPSQRKPCPLPLPLPKSPSESWLKKALPTVSSRTQMSKSPLGMILMHHPKEVEGHNTDPTWETIVKSSGEKNRRFQFSEDNE WGAPLGCLASRRASYRIHRRLLMSFNRSFYWNSNVSRYQLIDCRGQVIGGTTSKLSRSICPGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30990			Protein of unknown function (D...		Lus10033602 [exp]	0	1
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	2.8	0.8402
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	4.9	0.8347
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	6.3	0.8549
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	9.9	0.8217
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	10.1	0.8154
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	12.7	0.8031
AT2G37710		RLK	receptor lectin kinase (.1)		Lus10035627 [exp]	13.6	0.8089
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	14.0	0.8680
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	15.9	0.8028
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10019444 [exp]	16.6	0.7796

Compare expression of checked genes

Lus10033602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.