Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) AT2G42670 370 / 2e-131 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT5G15120 218 / 7e-71 Protein of unknown function (DUF1637) (.1) AT5G39890 198 / 4e-63 Protein of unknown function (DUF1637) (.1) AT1G18490 190 / 7e-60 Protein of unknown function (DUF1637) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017645 [exp] 483 / 9e-176 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10020711 [exp] 450 / 6e-163 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10029828 [exp] 379 / 1e-131 AT3G58670 322 / 4e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10015360 [exp] 210 / 3e-67 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10027254 [exp] 199 / 5e-63 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10038962 [exp] 191 / 7e-60 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10013620 [exp] 171 / 3e-52 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1) Lus10003861 [exp] 166 / 6e-50 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058000 [exp] 348 / 1e-122 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 342 / 3e-120 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) Potri.004G129400 [exp] 216 / 4e-70 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.015G055600 [exp] 200 / 1e-63 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 197 / 7e-63 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 194 / 1e-61 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 187 / 1e-58 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 186 / 2e-58 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10033603 pacid=23143432 polypeptide=Lus10033603 locus=Lus10033603.g ID=Lus10033603.BGIv1.0 annot-version=v1.0 ATGCCTTACTATATACAAAGGCTGTATAATACTTGCAAGTCGTCTTTCTCAACCAATGGCCCTGTTTCGGAAGAAGTGCTTGAAAAAGTTCGCAATATGT TAGAGAAAATCAAACCCTCTGACATAGGTCTTGAGCAAGAGGCACAATTGGTACGCAATTGGTCAGGTCCTGTGCAAGAACGAAATGGTCGCCGCCCAAC TTTACCACCTATCAAATACCTGCACCTCCATGAGTGTGACAGCTTCTCTATTGGTGTTTTCTGCATGCCACCGAATTCCATCATACCGCTCCATAATCAT CCTGGAATGACAGTATTAAGCAAGCTTGTATACGGAACAATGCATGTCCAGTCATACGATTGGCTCGATTCATCTCAGTCTACTGATCCAGCGCAAGCAA GACCTGCCAAGCTTGTTAGAGACGAGGATACAACAGCACCATGTAAGGCAACAGTTCTTTATCCAACCACTGGAGGCAACATCCACTGTTTCAGGGCTAT AACACCCTGCGCAATCTTCGATATTCTATCTCCCCCTTACTCTTCGGATCACGGAAGGCACTGCTCTTATTTCCGGGTCTCGCCAATAAGAGACCTGCCT GGTGAAGTTGAGGTGGATGGTGCAACAGTTTCGGAGGTTACATGGCTGGAGGAGTCCCAACCTCCTGATAACTTTGTGATACGGAGAGGTCTATATAAAG GTCCGGTAATTCGAACTTGA
AA sequence Show only first row Show all	>Lus10033603 pacid=23143432 polypeptide=Lus10033603 locus=Lus10033603.g ID=Lus10033603.BGIv1.0 annot-version=v1.0 MPYYIQRLYNTCKSSFSTNGPVSEEVLEKVRNMLEKIKPSDIGLEQEAQLVRNWSGPVQERNGRRPTLPPIKYLHLHECDSFSIGVFCMPPNSIIPLHNH PGMTVLSKLVYGTMHVQSYDWLDSSQSTDPAQARPAKLVRDEDTTAPCKATVLYPTTGGNIHCFRAITPCAIFDILSPPYSSDHGRHCSYFRVSPIRDLP GEVEVDGATVSEVTWLEESQPPDNFVIRRGLYKGPVIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58670			Protein of unknown function (D...		Lus10033603 [exp]	0	1
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	3.2	0.8926
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	8.0	0.8515
AT3G12760			unknown protein		Lus10009599 [exp]	8.5	0.8405
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	8.8	0.8784
AT4G26240			unknown protein		Lus10012919 [exp]	9.1	0.8241
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	10.4	0.8781
AT2G27285			Coiled-coil domain-containing ...		Lus10038787 [exp]	10.7	0.8373
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10033644 [exp]	11.2	0.8221
AT1G06060			LisH and RanBPM domains contai...		Lus10005633 [exp]	13.2	0.8326
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	14.1	0.8398

Compare expression of checked genes

Lus10033603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.