Plant FIBer expression Database

Lus10033604 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42700 664 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017646
[exp]
1071 / 0 AT2G42700 1003 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G142900
[exp]
799 / 0 AT2G42700 988 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10033604 pacid=23143410 polypeptide=Lus10033604 locus=Lus10033604.g ID=Lus10033604.BGIv1.0 annot-version=v1.0
ATGGCCGCCTTGGTGGATGTCACCAAATCATGCCTCGATTCCATCATTCAGACGAGAGAACATCTGGAGGGTGCCATTATTTATCTGGATTCGGGATACA
CAGAGAGCTTTCAATTTGCTGGAGCATTTCCTGTGTTACTGGACCTTGGAGTTCGAGCTGTATGCAGCCTTGAAAATATGTCTTCTCTTGATGCGGTGGT
GAATTGGAACTCAAACAGTGATGTTGCAAGGAAGATTGTGGTTTTTACGTCTCGCTTTTTGAGTGATGCACATCGGTACATTTTACGTTGTCTGAGCACC
CATGAGAATGTTCAGAAATGTACAGTTTATACTTCTATTTCCGAGACATCTCACTCAGCATATCCAGATTCACCTCTGGGGCCGGATGCTTACCATGAGT
ACGAATCTTTGCTTCTTCAAGATTTTGACGAGCTTGTAAAGAAGGGTGGAAAGAAGGCTGATTCCATAGAAGACGTGAAGTTCCAGGAAAATTTAAGCTT
TGAGAAAGAAGGATGGGCACAACTCACATTCGAGGAAGAAGATGCTTCTCGTCTTCATGCTAGTTCAAGCGGAAGAGAGAACGACAGCATAGGTCCAAAG
TTGGTTGTTTCAGTACACCATTTCCCAACGCTTTTGTGTCCTTTGTCCCGTAGAGTCTTCGTCTTACCGTCAGAGGGATCAGTTGCCGAAGCATCTTTAT
CAGCTGAAAATGAGGATTCTGTCAGTTCTGGACTACCAGCAATCAGTACAGGGGTGCTTGCAGATAGTGAAGATGTTCCACCTGGAGCCCTTCTTACTGC
ACATTTCCTTTATCATTTAGCTGCAAAGATGGATCTAAAGCTGGAAATATTTTCCCTTGGAGATCTTTCAAAAACAGTTGGCAAGATTATGACAGACATG
TCAAGTCTATATGATGTAGGACGTCGGAAGCGTTCAGCAGGGTTGTTGATAATTGACCGAACGCTGGATCTCCTCACTCCATGCTTCCATGCGGATTCAC
TTGTTGACCGCATGTTCTCAGCTTTACCCAGAAGGGAGAGAGTATCCCATCCTCAGGTCAAAGACTCACAGAGCCAGCTCAAACTCCGTTCTTCAAACCT
ACAACGTGCTCCTCTTGATGTAAAGATACCACTTGCAGAAATACTAAGTGATGAAATCAAGGAGTGTCAGCTTTTAGAAAGAATTCAAGCATTCCTAGAT
GGTTGGGATACCCAGAAATCTTCTCTCCCCGTTGCTGAAGTGGCTGGAAATGAGAAATCGGTTTCTTGTGTGGCTCAACTGCTCAACGGATCCTTTGTCT
CCACCGAAAGTTTTATGGGGACGGCATTTATGGAGGCCATATTAGACAGAAGAACGAAAGATGGAGCTTTGCTGGTTAAAAGGTGGCTGCAGGAAACCCT
GCATCGTGAAAAAATCAGTTTAGGTTCTAAAACTCGTTCGGGGTTTGCTTCAGCCGAAGTCCAAGCAATGGTAAAAGCACTGGCAAAAAACCAATCTTCA
CTGGTGAGAAACAAAGGAATTATTCTGTTAGCAGCTGCTGCAACTGCCGCCTTCGAAGCATCCTTTTCTGCTAGATGGGATGCATTTATCAGTGCCGAGA
AAATACTAAATGCAAGCGCTGAAGACACGAGCCAGAATCTTGCTGCTCAAATCGTCGATCTTGTTAACAAGAGTGGTTTAATTGGAGGAATGGAATCCTC
ACAAGGATTGATTTCTTTCCAAGATGCATTGCTGCTCATGATTGCTGGTTACATGTTAGCCGGCGAGAATTTCCCTACATCAGGGTCAGGAGGTCCCTGT
TCGTCGCAAGAGGACCACGCGCTGAAAGAAAGAAGCCGTCGTAGAAGTGATCCTCGAAAAGGCGCCAGTAGCCAAGCTTAA
AA sequence
>Lus10033604 pacid=23143410 polypeptide=Lus10033604 locus=Lus10033604.g ID=Lus10033604.BGIv1.0 annot-version=v1.0
MAALVDVTKSCLDSIIQTREHLEGAIIYLDSGYTESFQFAGAFPVLLDLGVRAVCSLENMSSLDAVVNWNSNSDVARKIVVFTSRFLSDAHRYILRCLST
HENVQKCTVYTSISETSHSAYPDSPLGPDAYHEYESLLLQDFDELVKKGGKKADSIEDVKFQENLSFEKEGWAQLTFEEEDASRLHASSSGRENDSIGPK
LVVSVHHFPTLLCPLSRRVFVLPSEGSVAEASLSAENEDSVSSGLPAISTGVLADSEDVPPGALLTAHFLYHLAAKMDLKLEIFSLGDLSKTVGKIMTDM
SSLYDVGRRKRSAGLLIIDRTLDLLTPCFHADSLVDRMFSALPRRERVSHPQVKDSQSQLKLRSSNLQRAPLDVKIPLAEILSDEIKECQLLERIQAFLD
GWDTQKSSLPVAEVAGNEKSVSCVAQLLNGSFVSTESFMGTAFMEAILDRRTKDGALLVKRWLQETLHREKISLGSKTRSGFASAEVQAMVKALAKNQSS
LVRNKGIILLAAAATAAFEASFSARWDAFISAEKILNASAEDTSQNLAAQIVDLVNKSGLIGGMESSQGLISFQDALLLMIAGYMLAGENFPTSGSGGPC
SSQEDHALKERSRRRSDPRKGASSQA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42700 unknown protein Lus10033604
[exp]
0 1
AT2G26890 KAM2, GRV2 KATAMARI2, GRAVITROPISM DEFECT... Lus10017747
[exp]
10.1 0.9002
AT5G24710 Transducin/WD40 repeat-like su... Lus10040563
[exp]
11.2 0.8999
AT1G54560 PCR1, ATXIE, XI... MYOSIN XI E, Myosin family pro... Lus10033864
[exp]
17.4 0.8833
AT5G44240 ALA2 aminophospholipid ATPase 2 (.1... Lus10039854
[exp]
17.4 0.8979
AT3G63460 EMB2221 transducin family protein / WD... Lus10019751
[exp]
17.7 0.8953
AT5G24710 Transducin/WD40 repeat-like su... Lus10028092
[exp]
17.9 0.8971
AT5G06120 ARM repeat superfamily protein... Lus10024115
[exp]
19.4 0.8830
AT2G19600 ATKEA4 K+ efflux antiporter 4, K+ eff... Lus10007999
[exp]
20.0 0.8375
AT1G24460 TNO1 TGN-localized SYP41 interactin... Lus10011393
[exp]
22.6 0.8709
AT2G46560 transducin family protein / WD... Lus10030236
[exp]
22.6 0.8848

Lus10033604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.