Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42700 213 / 2e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017646 [exp] 310 / 7e-102 AT2G42700 1003 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142900 [exp] 225 / 1e-69 AT2G42700 988 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10033605 pacid=23143273 polypeptide=Lus10033605 locus=Lus10033605.g ID=Lus10033605.BGIv1.0 annot-version=v1.0 ATGCAGCTGAAGCTGGAGTTGCGTGATAAAGTCGATAGCTTCTTCAAGTTCCTTCACAAGCTATCCACAGTGAGGATGAAGAGCGTTCCGTTGAAGGACG GTTTGTTCTCGGGAGGAAGCAATTTTGGAGGTGAGACGGACTTGTACAGAGGATTGTTATACAAAGTACTGACAAGAGTGTTGAGCAAGGCTGATATCCC AGGAATGGAGTACCATTCCTCGACCGTCGGAAGACTGTTCAAGAGTAGCTTTGGAAGGTTTGTTGGCCAGGCAAAACCGAGCCTAGGAGATCAGAACATC ATCATGGTTTTTGTCCTTGGAGGCATCAACGCCGTTGAGGTGCTGGAAGTTCAGGAGGCGTTGTCGGAAAGCGAAAGGCCAGACGTGGAACTGATTCTTG GCGGGACGACGATCCTTACCCCGGATGATATGTTTGATTTGCTGATTGGAGAATCCAGCTACATGTGA
AA sequence Show only first row Show all	>Lus10033605 pacid=23143273 polypeptide=Lus10033605 locus=Lus10033605.g ID=Lus10033605.BGIv1.0 annot-version=v1.0 MQLKLELRDKVDSFFKFLHKLSTVRMKSVPLKDGLFSGGSNFGGETDLYRGLLYKVLTRVLSKADIPGMEYHSSTVGRLFKSSFGRFVGQAKPSLGDQNI IMVFVLGGINAVEVLEVQEALSESERPDVELILGGTTILTPDDMFDLLIGESSYM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42700			unknown protein		Lus10033605 [exp]	0	1
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	7.1	0.8539
AT2G39805			Integral membrane Yip1 family ...		Lus10004695 [exp]	15.5	0.8537
AT4G33740			unknown protein		Lus10020507 [exp]	16.7	0.8589
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	16.8	0.8446
AT1G64385			unknown protein		Lus10032376 [exp]	17.5	0.8553
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	23.1	0.8401
AT3G22660			rRNA processing protein-relate...		Lus10037050 [exp]	27.0	0.8394
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	29.2	0.8495
AT1G28410			unknown protein		Lus10015403 [exp]	29.5	0.8314
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	31.5	0.8359

Compare expression of checked genes

Lus10033605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.